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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr001083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | AP2 | ||||||||
Protein Properties | Length: 653aa MW: 72207.1 Da PI: 7.0518 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.1 | 1.9e-12 | 323 | 379 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Pbr001083.1 323 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 379 78*******************87776664446655.77******************98 PP | |||||||
2 | AP2 | 41.3 | 3.8e-13 | 424 | 474 | 3 | 55 |
AP2 3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Pbr001083.1 424 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 474 9****99**********988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-9 | 323 | 379 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.09E-19 | 323 | 387 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-14 | 323 | 389 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.451 | 324 | 387 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-22 | 324 | 393 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-12 | 324 | 388 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 325 | 336 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.30E-23 | 422 | 484 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-16 | 422 | 483 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-30 | 423 | 488 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-18 | 423 | 482 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 423 | 482 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.9E-8 | 424 | 474 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 464 | 484 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MKSMGNDGNN SNSNNNWLDF SLSPNMKMES PSSSSSVAAA SFFHSPPHFS YGVYYGVEGG 60 GGGEGEDNGP VLYSPLSMMP LKSDGSLCIM EALNRSQHHP HAAMVTTTSP TPKLEDFFGG 120 AAMGTHHYES ANDKEAMALS LDSMFYPQNP HPTTHHHVPS NHQNLLSHNL QHEQHTQQHH 180 QQHYSSYYSG LRTHEMFLED GHKQSHVSAD NYDLHPARMG LDLSIAEMKS WVSRNNVMEQ 240 NNMAAGCMGE NGGMPYGDLQ CLSLSMSPGS QSSCVTGSQQ ISPTVTADCV TMVVDTKKRG 300 PIKVDQKQIV HRKSLDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQGGY 360 DMEEKAARAY DLAALKYWGP STHINFPLEN YKKELEDMKN MTRQEYVAHL RRKSSGFSRG 420 ASMYRGVTSR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN 480 FDITRYDVDR IMSSNTLLAG ELAKRNKEVV PINEATNETN VSQIGNGEAV VPLKNISEGE 540 DWKMALYQSS QHLDQKQPST ETQNVIQAEA EDSTKMGNAH FSNASSLVTS LGSSREASPD 600 KSCQPSFFGM PPSASKFFTS SSDAVSSWIP TVQSRPGLTI PHMPIFAAWT DA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr001083.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362606.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Swissprot | Q38914 | 1e-167 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A498KKR0 | 0.0 | A0A498KKR0_MALDO; Uncharacterized protein | ||||
STRING | XP_009362606.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-131 | AP2 family protein |