PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000670.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 572aa    MW: 63211.4 Da    PI: 9.7868
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000670.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091044237
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     ++W t E++llv av+++G+ +W+++a ++g gR+ 
      Pbr000670.1 10 QPWGTLEELLLVSAVNRHGTQSWDSVALEVG-GRCS 44
                     89*****************************.9984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.12E-5745IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-5744IPR009057Homeodomain-like
SMARTSM007170.0068866IPR001005SANT/Myb domain
PfamPF002499.4E-9944IPR001005SANT/Myb domain
CDDcd001674.28E-51164No hitNo description
SMARTSM002977.1E-17108443IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.6E-17319460IPR001487Bromodomain
SuperFamilySSF473701.44E-18342446IPR001487Bromodomain
CDDcd043695.43E-9344438No hitNo description
PfamPF004394.8E-12346428IPR001487Bromodomain
PROSITE profilePS5001411.367352424IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAGEHGTRTQ PWGTLEELLL VSAVNRHGTQ SWDSVALEVG GRCSAKATTI LTALNCRDKF  60
EDIKRRFVLG DDDDSSGSLG AMVDKLRRLR VEELRREVRR RDVSIVSLEL KVKRLEEERE  120
RSLKEDAEAT SPSKDLKRGG EDQRDGSQEN LAGKMNSGED FGWDFNSDDR ENRSFNESNS  180
TSQRGAAEKQ AEGKEKEPGP EGNEPDPMRA KIRSEPDRDC SVNGKVADDD DEDNHNNKNG  240
DDTAKASQLD DSSELWESGG ESKREGKRGR RGGATASRQQ NSDVQSSASL SKRKRRRGGG  300
GEGGGGGSRS WSRSSSGEEA EGDEVSPATS KGVKQLKLVK SEPLIKVLKI IRSHRLGSVF  360
ERRLRSQESE RYKSLIRQHM DLRMIQSKLN KGVYTEDCIR LFFRDLLLLF NNAVVFFRKN  420
SPEHNAAQEL RSIVLKEMND QLPKPQSATE TEKSNVSKIE AKAQKLESHG SEKPTKSSIV  480
VCGKLGSVNA LSDAKNRKGD KIKEKAKAAN VKKADGAAFV KVEDKGVRKR RTQERGGGGG  540
ESTRGRNXXX XXXXXXXXXX XXECSKADQA A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296KRKRRR
2292296RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000670.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018507093.10.0PREDICTED: uncharacterized protein LOC103963872
TrEMBLA0A498KBU30.0A0A498KBU3_MALDO; Uncharacterized protein
STRINGXP_009375020.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.16e-23DNA-binding bromodomain-containing protein