PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J326600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 240aa    MW: 25482.6 Da    PI: 8.2254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J326600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-1659108355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + GVr ++ +g+++AeIrd + +g  ++++lg+f+t+e Aa a+++a+ + +g
  Pavir.J326600.1.p  59 FIGVRKRP-WGKFAAEIRDSTRRG--ASVWLGTFDTPEAAALAYDQAAFSARG 108
                        68******.**********43343..**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.45E-2058117IPR016177DNA-binding domain
SMARTSM003809.4E-2958122IPR001471AP2/ERF domain
PROSITE profilePS5103220.73258116IPR001471AP2/ERF domain
PRINTSPR003671.2E-75970IPR001471AP2/ERF domain
PfamPF008472.7E-1259108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2659116IPR001471AP2/ERF domain
CDDcd000183.59E-1459118No hitNo description
PRINTSPR003671.2E-78298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLLQLDAFVL GTDAAGDSSD WLSASPSSSS DAAVVPLSPS TPEQRRRPDG EKRPATPAFI  60
GVRKRPWGKF AAEIRDSTRR GASVWLGTFD TPEAAALAYD QAAFSARGGA AVLNFPVDRV  120
RESLAALALA GAGAGSCSGS PVLALKRRHS KRTRRRKHQL SPATSTDSSG RNHLDPVQQL  180
ERQRADASAV PVPEPEQRVA ALCQCHCRGG GVVELEDLGT DYLDELLRVS SDLECALIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-23591161572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J326600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276832e-68KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828259.12e-81ethylene-responsive transcription factor ERF091-like
TrEMBLA0A3L6Q2G42e-83A0A3L6Q2G4_PANMI; Uncharacterized protein
STRINGPavir.Hb01074.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-29ethylene response factor 1