PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG840500.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 617aa    MW: 66232.2 Da    PI: 7.1595
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG840500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.11.9e-28169222155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Pavir.9NG840500.4.p 169 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 222
                          79*******************.********************************8 PP
2Response_reg58.24.6e-2099326109
                          EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          v+++ +++ al++l+e++  +D+i+ D+ mp+mdG++ll++   e  +lp+i+++a +  + + + +k Ga d+l Kp+ +eel +
  Pavir.9NG840500.4.p   9 VTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLEHVGLEM-DLPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKN 93 
                          889999********99999***********************6644.8***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.8E-1561611IPR017053Response regulator B-type, plant
PROSITE profilePS5011035.485199IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.8E-9195IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.5E-321118No hitNo description
SuperFamilySSF521721.85E-261107IPR011006CheY-like superfamily
CDDcd001562.01E-20998No hitNo description
PfamPF000726.5E-17993IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.609.3E-30166227IPR009057Homeodomain-like
PROSITE profilePS5129411.674166225IPR017930Myb domain
SuperFamilySSF466893.94E-20166226IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-25169222IPR006447Myb domain, plants
PfamPF002496.8E-7171220IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MLASVSCFVT TCPQATRALT MLRENRRGFD VIISDVHMPD MDGFRLLEHV GLEMDLPVIM  60
MSADSRTDIV MKGIKHGACD YLIKPVRMEE LKNIWQHVVR KKFNENKDHE HSGSLDDTDR  120
NRPTNNDNEY ASSANDGGDG SWKSQKKKRE KEEDEADLEN GDPSSTSKKP RVVWSVELHQ  180
QFVNAVNHLG IDKAVPKKIL ELMNVPGLTR ENVASHLQKF RLYLKRIAQH HAGIPHPFVA  240
PASSTKVAPL GGLEFQALAA SGQIPPQALA ALQDELLGRP TSSLALPGRD QSSLQLAAIK  300
GNKPHGEREI AFGQPIYKCP NNTYGAFPQS SPGVGGLPSF GAWPNNKLGM TDSPSVLGNV  360
NNSQNSNLLL HELQQQPDSL LSGTLHNIDV KPSGIVMPSQ SLNAFPASEG ISPNQNPLVI  420
PSQSQSFLAS ISPSMKHEPV LASSSPSNSL LGGIDMVNQA STSQPLISTH GTNLPGLLNR  480
SSNAVPSPGI SNFQSGNNPY VVNQNAMGVS SRPPGVLKTE STDSLSRSYG YIGGSTSVDS  540
GLLSQSKNPQ YGLLPNPNDV TGSWSPSQDI DSCGNNLGQG YPGSTSSNYQ SSNVTLGKLP  600
DQGRGRNHEF VGKVQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24165228164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8780.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG840500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0601300.0AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds.
GenBankEU9755450.0EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468245.10.0two-component response regulator ORR21
RefseqXP_021306470.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A3L6SBE00.0A0A3L6SBE0_PANMI; Two-component response regulator
STRINGPavir.Ia04946.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-99response regulator 2