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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG840500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARR-B | ||||||||
Protein Properties | Length: 656aa MW: 70369.7 Da PI: 6.7332 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90 | 2.1e-28 | 169 | 222 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Pavir.9NG840500.3.p 169 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 222 79*******************.********************************8 PP | |||||||
2 | Response_reg | 58.1 | 5e-20 | 9 | 93 | 26 | 109 |
EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 v+++ +++ al++l+e++ +D+i+ D+ mp+mdG++ll++ e +lp+i+++a + + + + +k Ga d+l Kp+ +eel + Pavir.9NG840500.3.p 9 VTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLEHVGLEM-DLPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKN 93 889999********99999***********************6644.8***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.99E-26 | 1 | 107 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.8E-9 | 1 | 95 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 35.485 | 1 | 99 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 6.1E-32 | 1 | 118 | No hit | No description |
PIRSF | PIRSF036392 | 1.7E-158 | 1 | 638 | IPR017053 | Response regulator B-type, plant |
Pfam | PF00072 | 7.1E-17 | 9 | 93 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.33E-20 | 9 | 98 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-29 | 166 | 227 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.3E-20 | 166 | 226 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.674 | 166 | 225 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.9E-25 | 169 | 222 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.3E-7 | 171 | 220 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MLASVSCFVT TCPQATRALT MLRENRRGFD VIISDVHMPD MDGFRLLEHV GLEMDLPVIM 60 MSADSRTDIV MKGIKHGACD YLIKPVRMEE LKNIWQHVVR KKFNENKDHE HSGSLDDTDR 120 NRPTNNDNEY ASSANDGGDG SWKSQKKKRE KEEDEADLEN GDPSSTSKKP RVVWSVELHQ 180 QFVNAVNHLG IDKAVPKKIL ELMNVPGLTR ENVASHLQKF RLYLKRIAQH HAGIPHPFVA 240 PASSTKVAPL GGLEFQALAA SGQIPPQALA ALQDELLGRP TSSLALPGRD QSSLQLAAIK 300 GNKPHGEREI AFGQPIYKCP NNTYGAFPQS SPGVGGLPSF GAWPNNKLGM TDSPSVLGNV 360 NNSQNSNLLL HELQQQPDSL LSGTLHNIDV KPSGIVMPSQ SLNAFPASEG ISPNQNPLVI 420 PSQSQSFLAS ISPSMKHEPV LASSSPSNSL LGGIDMVNQA STSQPLISTH GTNLPGLLNR 480 SSNAVPSPGI SNFQSGNNPY VVNQNAMGVS SRPPGVLKTE STDSLSRSYG YIGGSTSVDS 540 GLLSQSKNPQ YGLLPNPNDV TGSWSPSQDI DSCGNNLGQG YPGSTSSNYQ SSNVTLGKLP 600 DQGRGRNHEF VGKGTCIPTR FAVDEVESPT NNLSHNIGNS ADIVNPDMFG FSGQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-24 | 165 | 228 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.878 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG840500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060558 | 0.0 | BT060558.1 Zea mays full-length cDNA clone ZM_BFb0015O02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468245.1 | 0.0 | two-component response regulator ORR21 | ||||
Refseq | XP_021306470.1 | 0.0 | two-component response regulator ORR21 | ||||
Swissprot | A2XE31 | 0.0 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
TrEMBL | A0A3L6SBE0 | 0.0 | A0A3L6SBE0_PANMI; Two-component response regulator | ||||
STRING | Pavir.Ia04946.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-98 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG840500.3.p |