PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG840500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 686aa    MW: 73768.7 Da    PI: 6.5545
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG840500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28199252155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Pavir.9NG840500.1.p 199 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 252
                          79*******************.********************************8 PP
2Response_reg77.64.5e-26151231109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ + +l+++l + +y +v+++ +++ al++l+e++  +D+i+ D+ mp+mdG++ll++   e  +lp+i+++a +  + + +
  Pavir.9NG840500.1.p  15 VLVVDDDPTCLVVLKRMLLECRY-DVTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLEHVGLEM-DLPVIMMSADSRTDIVMK 102
                          89*********************.***************99999***********************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +k Ga d+l Kp+ +eel +
  Pavir.9NG840500.1.p 103 GIKHGACDYLIKPVRMEELKN 123
                          ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.9E-1801668IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.3E-4212148No hitNo description
SuperFamilySSF521721.71E-3612137IPR011006CheY-like superfamily
SMARTSM004481.8E-3013125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.03714129IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-2315123IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.99E-2716128No hitNo description
PROSITE profilePS5129411.674196255IPR017930Myb domain
SuperFamilySSF466899.14E-20196256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29196257IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-25199252IPR006447Myb domain, plants
PfamPF002497.8E-7201250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MAEARGGDFP VGMKVLVVDD DPTCLVVLKR MLLECRYDVT TCPQATRALT MLRENRRGFD  60
VIISDVHMPD MDGFRLLEHV GLEMDLPVIM MSADSRTDIV MKGIKHGACD YLIKPVRMEE  120
LKNIWQHVVR KKFNENKDHE HSGSLDDTDR NRPTNNDNEY ASSANDGGDG SWKSQKKKRE  180
KEEDEADLEN GDPSSTSKKP RVVWSVELHQ QFVNAVNHLG IDKAVPKKIL ELMNVPGLTR  240
ENVASHLQKF RLYLKRIAQH HAGIPHPFVA PASSTKVAPL GGLEFQALAA SGQIPPQALA  300
ALQDELLGRP TSSLALPGRD QSSLQLAAIK GNKPHGEREI AFGQPIYKCP NNTYGAFPQS  360
SPGVGGLPSF GAWPNNKLGM TDSPSVLGNV NNSQNSNLLL HELQQQPDSL LSGTLHNIDV  420
KPSGIVMPSQ SLNAFPASEG ISPNQNPLVI PSQSQSFLAS ISPSMKHEPV LASSSPSNSL  480
LGGIDMVNQA STSQPLISTH GTNLPGLLNR SSNAVPSPGI SNFQSGNNPY VVNQNAMGVS  540
SRPPGVLKTE STDSLSRSYG YIGGSTSVDS GLLSQSKNPQ YGLLPNPNDV TGSWSPSQDI  600
DSCGNNLGQG YPGSTSSNYQ SSNVTLGKLP DQGRGRNHEF VGKGTCIPTR FAVDEVESPT  660
NNLSHNIGNS ADIVNPDMFG FSGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24195258164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8780.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG840500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0601300.0AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds.
GenBankEU9755450.0EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794212.10.0two-component response regulator ORR21
RefseqXP_025794213.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A3L6SBE00.0A0A3L6SBE0_PANMI; Two-component response regulator
STRINGPavir.Ia04946.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-115response regulator 2