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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG609200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 27411.9 Da PI: 6.2351 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.3 | 4e-12 | 33 | 65 | 96 | 128 |
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g + gl+ktL+fy+grap ge+tdWvmheyrl Pavir.9NG609200.1.p 33 DGGVYGLRKTLIFYRGRAPCGERTDWVMHEYRL 65 67789**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.732 | 1 | 88 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-16 | 31 | 87 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-5 | 32 | 65 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MRGAVEGLDG SIRARRRSLR GSEGEISCLC DGDGGVYGLR KTLIFYRGRA PCGERTDWVM 60 HEYRLCQDLA HGACNFIGAY ALCRVIKRHE AGLLQGEPAA RAKGASNAAG GRAQMSKLSA 120 FRPTNSSPPP TLDMSREMCA MAESGSTFQS PLAYGGDATA TATTGLPSSP LPPPLFVPSG 180 HSSPPHDTFF IGGDDMGMVS AAEHELRWDS FAYPSTFSNG AEMWNAAASP MLCRQASDGG 240 VDDLAMMLQP NPSNEMVL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG609200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF795488 | 8e-65 | JF795488.1 Zea mays NAC transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792378.1 | 1e-105 | NAC domain-containing protein 71-like | ||||
TrEMBL | A0A2T7C9T3 | 1e-104 | A0A2T7C9T3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia02425.1.p | 1e-145 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 7e-19 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG609200.1.p |