PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG356100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29014.3 Da PI: 8.9179 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 99 | 149 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+++taeeAa a++ a+ +l+g+ Pavir.9NG356100.1.p 99 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEEAALAYDGAAFRLRGA 149 59******9.**********955...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.73E-31 | 98 | 158 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-32 | 99 | 157 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.367 | 99 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 99 | 157 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-35 | 99 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-14 | 100 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MTTAMEQLVV TPLPPIGATE YRDLIQALAT PVQSAPVVPF MADTDQSPAM AVAGASCYHL 60 ITPAQAAYYY RIGRCMGPAP RVMKRHYGLA APAAAMAKLY RGVRQRHWGK WVAEIRLPRN 120 RTRLWLGTYD TAEEAALAYD GAAFRLRGAA ARLNFPELRR GGRHLAPPLH PSVDAKLQAV 180 TSAPAPAASQ GLESAGIKKK PGCCSGSEAS TTTTAAGGAD LSSSSIGSSS LGKAAAPLPE 240 MPRVDCSEAP WDEAGVVALR MYPSLEVDWE AILS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 95 | 156 | 1 | 63 | ATERF1 |
3gcc_A | 3e-20 | 95 | 156 | 1 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7951 | 5e-51 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG356100.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098494 | 1e-91 | FP098494.1 Phyllostachys edulis cDNA clone: bphyem124a13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796806.1 | 1e-167 | ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A3L6TLQ4 | 1e-168 | A0A3L6TLQ4_PANMI; Ethylene-responsive transcription factor RAP2-13-like | ||||
STRING | Pavir.Ia02495.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 9e-33 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG356100.1.p |