PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG170600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 361aa    MW: 39400.8 Da    PI: 7.3899
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG170600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix612.9e-1939108271
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                          Wt  e+++Liea+r+++e+   g +  ++W++v +++++ g++rs +qC+++w+nl ++ykk+++ e  +
  Pavir.9NG170600.1.p  39 WTLPETMLLIEAKRKVHEERHPGDQGLARWRWVEDYCWRAGCRRSHNQCNDRWDNLMRDYKKVRAYELAG 108
                          ***************************************************************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.0023195IPR017877Myb-like domain
SuperFamilySSF466898.54E-73497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-53497IPR009057Homeodomain-like
PfamPF138371.5E-1337106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDGGSRALLS QTGDEQSRSV VMAGAGALTV ARDYRRGNWT LPETMLLIEA KRKVHEERHP  60
GDQGLARWRW VEDYCWRAGC RRSHNQCNDR WDNLMRDYKK VRAYELAGAG AGRAPSYWAM  120
GRAERKEKDL PSNLLREIYN AMGEVIERRM SLGGCGGSGG GAGGASSSLL DVPMQASPLA  180
QFLPRSLPPL EQETRHHGYG VAHFSPESPE RKRRRPSLDE LRPGTGSSMP PAPGPHVHRQ  240
EQGRHHREDD DDHGRDGESS DSERSDEEEE EVLSGAIGRC AAILSEALES REAAEERRHR  300
EVMAVEERRG RALQARREAG EQCVAGLAAA VNQLAGSMLA LAAAKHKDKG GGGGPAAPPK  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210214RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG170600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836020.0BT083602.1 Zea mays full-length cDNA clone ZM_BFb0018E14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792444.10.0uncharacterized protein LOC112873645
TrEMBLA0A3L6SE930.0A0A3L6SE93_PANMI; Uncharacterized protein
STRINGPavir.J22454.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.14e-43Trihelix family protein