PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG644100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 312aa MW: 32885.7 Da PI: 6.3985 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 125 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a++ a+ +l+g Pavir.9KG644100.1.p 125 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 174 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.71E-32 | 124 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.3E-33 | 125 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 125 | 182 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.63 | 125 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-38 | 125 | 188 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-14 | 126 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MATTIDWHGR GAALHAALYE MADSKELVRA LAVAAPPVQQ QQQPQTISFA YPCSGGVEQQ 60 GAASSLLGAG AGAGGLTPAQ VLQVQSQLQF LRRPAAAGGA LAAVATQPMK RQAPAPLPAR 120 PVSKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAEE AALAYDSAAF RLRGDSAKLN 180 FPELRRGGAH LGPPLHAAVD AKLHAICNGT DVAPQNQSQS QSQSQSNATA ATAATTPSTF 240 SSASPDIKIE PGCPGSESSS SADGDVSSTD SSDVVPEMQL LDFSEAPWDE SESLHLRKYP 300 SLEIDWESIL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 124 | 182 | 4 | 63 | ATERF1 |
3gcc_A | 1e-20 | 124 | 182 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.23342 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG644100.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795666.1 | 0.0 | ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A2S3ITE4 | 0.0 | A0A2S3ITE4_9POAL; Uncharacterized protein | ||||
STRING | Si036827m | 1e-148 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-38 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG644100.1.p |