PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG618400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 759aa MW: 84903.1 Da PI: 4.8437 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.9 | 2.3e-20 | 70 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lp+G++F+P+d +l+ +L+++v + + + + v+++ + +++P+d+p v+++ + yfF++r ++y+++ +n + Pavir.9KG618400.2.p 70 LPRGVEFNPSDGDLL-WHLAAEVGNGQaerhpfiN---KfitsVVDDRGFSYTHPRDIP-GVRQDGHASYFFHRRFESYSNEGDENII-- 152 699************.7899999988866655541...13333688889**********.667788899**********998888775.. PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 Wk+ g++++++ +g+l g+k+++v+y +++ +++tdW +h+y++ Pavir.9KG618400.2.p 153 ---WKKIGTSRSIFL-DGTLQGCKEVFVLYadMMSDKGSHQTDWRLHQYHI 199 ...************.999***********5434666668*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-25 | 64 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.792 | 70 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-8 | 71 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 759 aa Download sequence Send to blast |
MATGSSSLIS HLDRSPDPDH CPLSGRDRLT VQPPASARAE SSPRLPDRCE ASVDTGRADG 60 GSQQQSWPGL PRGVEFNPSD GDLLWHLAAE VGNGQAERHP FINKFITSVV DDRGFSYTHP 120 RDIPGVRQDG HASYFFHRRF ESYSNEGDEN IIWKKIGTSR SIFLDGTLQG CKEVFVLYAD 180 MMSDKGSHQT DWRLHQYHIR NTVKHEEELV LSKIFFESRD SLCELAEEAR VEAELDVSTP 240 VDSREKCITC SNPRVYNETD DLDHMSLKER YRILLADKST CPATLSARES SKTASKRNQE 300 VTAYKEDTCS MLQEISSAPP IIESNPMDDS NSSRLLCGDD SGFLSISGIS SCTGPSICEV 360 GCSHDPVEEN QVGGTATCGS ESSELIVRKQ GALLADVKLE PAFEGYEIDP SKSPQENPAQ 420 AEGSVPSLGV KDELNECDLP GLCEKKFSSR KRRKRKTTSN SNEKMLEEDA YTNDEGIAYC 480 SRRRRMKKTA TDSIEKALDE DAPGLLEILL TRGIAVQEIK LYGAEEDNEM IPDSSESSFE 540 DLENVIANIF PKRASLLKLS IARHEKGEKA IYCLSCLISL IEQSRYLQFR DCPVEWGWCR 600 DLQSFIFVFR SHNRIVLERP EYGYATYFFE VVQSLSIEWQ IRRLVIAMKL SGCGRTALIE 660 NRPLLVGEDL TEGEAHVLEE YGWIRNTGLG TMVNYRDRVV HDRWTEKSVS DWRAKIGKLL 720 MTGYAEGQSV TVYGPKKVAN LLEATGDAEI DIKLEDPF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 449 | 455 | RKRRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11122 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG618400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795332.1 | 0.0 | uncharacterized protein LOC112875626 isoform X1 | ||||
TrEMBL | A0A2T7CFK7 | 0.0 | A0A2T7CFK7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00786.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 5e-37 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG618400.2.p |