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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG540900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARR-B | ||||||||
Protein Properties | Length: 642aa MW: 69163.9 Da PI: 7.7197 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.1 | 2e-28 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Pavir.9KG540900.3.p 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77.6 | 4.3e-26 | 18 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+p+ + +l+++l + +y +v+++ +++ al++l+e++ +D+i+ D+ mp+mdG++ll+ e++lp+i+++a + + + + Pavir.9KG540900.3.p 18 VLVVDDDPTCLVVLKRMLLECRY-DVTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMK 105 89*********************.***************99999********************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 +k Ga d+l Kp+ +eel + Pavir.9KG540900.3.p 106 GIKHGACDYLIKPVRMEELKN 126 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.9E-176 | 1 | 571 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 4.2E-42 | 15 | 151 | No hit | No description |
SuperFamily | SSF52172 | 1.99E-36 | 15 | 141 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.7E-30 | 16 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.196 | 17 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.6E-23 | 18 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.36E-27 | 19 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-30 | 199 | 260 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.674 | 199 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-20 | 199 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-25 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.1E-7 | 204 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MAATAEARGG DFPVGMKVLV VDDDPTCLVV LKRMLLECRY DVTTCPQATR ALTMLRENRR 60 GFDVIISDVH MPDMDGFRLL ELVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR 120 MEELKNIWQH VVRKKFSENK DHEHSGSLDD TDRNRPTNND NEYASSANDG GDGSWKSQKK 180 KREKEEDEAD LENGDPSSTS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG 240 LTRENVASHL QKFRLYLKRI AQHHAGIPHP FVAPASSAKV APLGGLEFQA LAASGQIPPQ 300 ALAALQDELL GRPTSSLALP GRDQSSLRLA AIKGNKPHGE REIAFGQPIY KCQNNAYGAF 360 PQSSPGVGGL PSFGAWPNNK LGTTDSPSAL GNVSNSQNSN LLLHELQQQP DSLLSGTLHN 420 IDVKPSGIVM PSQSLNVFPA SEGISPNQNP LVMPSQSQGF LPSIPPSMKH EPLLASSPSN 480 SLLGGIDMVN QASTSQPLIS THGANFPGLM NRSSNAMPSP GISNFQSGNN PYVVNQNAMG 540 VSSRPPGVLK TESTDPLSRS YGYGGSSSVD SGGLLHKILI VMEILLGKAT LGPLHLTTRV 600 PMRPLGSCPI KDEGGIMGLL AKVLAFQSAL QWMRLSLQLT T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-23 | 198 | 261 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.878 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG540900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB060130 | 0.0 | AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds. | |||
GenBank | EU975545 | 0.0 | EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468245.1 | 0.0 | two-component response regulator ORR21 | ||||
Refseq | XP_021306470.1 | 0.0 | two-component response regulator ORR21 | ||||
Swissprot | A2XE31 | 0.0 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
TrEMBL | A0A3L6SBE0 | 0.0 | A0A3L6SBE0_PANMI; Two-component response regulator | ||||
STRING | Pavir.Ib00921.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-113 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG540900.3.p |