PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG540900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 688aa    MW: 73866.9 Da    PI: 6.7342
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG540900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28202255155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Pavir.9KG540900.1.p 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255
                          79*******************.********************************8 PP
2Response_reg77.54.8e-26181261109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ + +l+++l + +y +v+++ +++ al++l+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + +
  Pavir.9KG540900.1.p  18 VLVVDDDPTCLVVLKRMLLECRY-DVTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMK 105
                          89*********************.***************99999********************87754.558***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +k Ga d+l Kp+ +eel +
  Pavir.9KG540900.1.p 106 GIKHGACDYLIKPVRMEELKN 126
                          ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.4E-1801670IPR017053Response regulator B-type, plant
SuperFamilySSF521722.28E-3615141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.7E-4215151No hitNo description
SMARTSM004484.7E-3016128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.19617132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.1E-2318126IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.39E-2719131No hitNo description
SuperFamilySSF466899.14E-20199259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29199260IPR009057Homeodomain-like
PROSITE profilePS5129411.674199258IPR017930Myb domain
TIGRFAMsTIGR015573.0E-25202255IPR006447Myb domain, plants
PfamPF002497.8E-7204253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MAATAEARGG DFPVGMKVLV VDDDPTCLVV LKRMLLECRY DVTTCPQATR ALTMLRENRR  60
GFDVIISDVH MPDMDGFRLL ELVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR  120
MEELKNIWQH VVRKKFSENK DHEHSGSLDD TDRNRPTNND NEYASSANDG GDGSWKSQKK  180
KREKEEDEAD LENGDPSSTS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG  240
LTRENVASHL QKFRLYLKRI AQHHAGIPHP FVAPASSAKV APLGGLEFQA LAASGQIPPQ  300
ALAALQDELL GRPTSSLALP GRDQSSLRLA AIKGNKPHGE REIAFGQPIY KCQNNAYGAF  360
PQSSPGVGGL PSFGAWPNNK LGTTDSPSAL GNVSNSQNSN LLLHELQQQP DSLLSGTLHN  420
IDVKPSGIVM PSQSLNVFPA SEGISPNQNP LVMPSQSQGF LPSIPPSMKH EPLLASSPSN  480
SLLGGIDMVN QASTSQPLIS THGANFPGLM NRSSNAMPSP GISNFQSGNN PYVVNQNAMG  540
VSSRPPGVLK TESTDPLSRS YGYGGSSSVD SGLLSSQSKN PQYGLLQNPN DVTGRWSPSQ  600
DIDSYGNTIG QGHPGSSSSN YQSSNAALGK LPDQGRGRNH GFVGKGTCIP IRFAVDEVES  660
PTNNLSHSIG SSADIVNPDI FEFSGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24198261164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8780.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG540900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0601300.0AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds.
GenBankEU9755450.0EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794212.10.0two-component response regulator ORR21
RefseqXP_025794213.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A3L6SBE00.0A0A3L6SBE0_PANMI; Two-component response regulator
STRINGPavir.Ib00921.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-113response regulator 2