PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG268900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 296aa    MW: 32032.7 Da    PI: 7.3446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG268900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18108158256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+W+AeIrdp+    r  r++lg+f ta+ Aa+a++ a+++l+g+
  Pavir.9KG268900.1.p 108 QYRGVRQRP-WGKWAAEIRDPV----RgVRVWLGTFPTADSAARAYDGAARRLRGA 158
                          69*******.**********63....56*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-32107166IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21108166IPR016177DNA-binding domain
CDDcd000181.25E-28108167No hitNo description
PROSITE profilePS5103224.447108165IPR001471AP2/ERF domain
PfamPF008472.9E-12108157IPR001471AP2/ERF domain
SMARTSM003808.8E-36108171IPR001471AP2/ERF domain
PRINTSPR003674.7E-11109120IPR001471AP2/ERF domain
PRINTSPR003674.7E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MCGGAIIADL IPAARSDCRS PVSQPRQAKN KRPWRGHGDD DFEAAFEEFD GDSEEEAFEM  60
DDIDNDDADK EEALAPFGFS SLFPQGRHGK NTSRLEARRR PGRRNTRQYR GVRQRPWGKW  120
AAEIRDPVRG VRVWLGTFPT ADSAARAYDG AARRLRGAKA KLNFPSSPPL DRKRRRRSYA  180
NANASAVIAN CPPTVSHAAA APGVVREPGG AKKPPANGGA MQALPPLPPS AVCASTGGQQ  240
EAFDPYDLYG ELASYFSFDV SAFEPLESML TGGIAAEERG TMPLWSFGDD GSLCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20107165463ATERF1
3gcc_A1e-20107165463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175RKRRR
2171177RKRRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG268900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791795.11e-155ethylene-responsive transcription factor 1-like
TrEMBLA0A2T7C7U01e-155A0A2T7C7U0_9POAL; Uncharacterized protein
STRINGPavir.Ib02796.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151951415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.32e-16related to AP2 2