PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG213000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 307aa    MW: 35135.4 Da    PI: 5.602
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG213000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.51.1e-26152206156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k rl Wt +LH++F+ av++L G++kA+Pk+ile+mkvk Lt+e+++SHLQkYRl+
  Pavir.9KG213000.2.p 152 KSRLIWTMQLHRQFIAAVNSL-GADKAVPKKILEIMKVKHLTREQIASHLQKYRLH 206
                          68*******************.9*******************************97 PP
2Response_reg411e-14109623109
                          CEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  23 yeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                            +v++  + +ea+  +  +++ +Dli++D+  p+ d l +l+e +++   +p ++++++g+ +++ +++  Ga+dfl Kp  +eel +
  Pavir.9KG213000.2.p  10 P-RVTTYNNVREAMSFIyaNQQSVDLIICDLFFPTEDTLLILREATSKF-GIPTVIMSSNGDTSTVMKYITNGASDFLIKPLRIEELKN 96 
                          5.799999999999999545555*********************99988.9***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011023.0761102IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-10996IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.41E-1811133IPR011006CheY-like superfamily
CDDcd001569.92E-1311102No hitNo description
Gene3DG3DSA:3.40.50.23001.7E-1911110No hitNo description
PROSITE profilePS5129411.327147208IPR017930Myb domain
SuperFamilySSF466899.5E-19150209IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-27151209IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-25152206IPR006447Myb domain, plants
PfamPF002493.7E-6157204IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MHNSVDDPSP RVTTYNNVRE AMSFIYANQQ SVDLIICDLF FPTEDTLLIL REATSKFGIP  60
TVIMSSNGDT STVMKYITNG ASDFLIKPLR IEELKNIWQH VFRKQIGAEH RMCNNVQHID  120
QLSFRTTEAT ATLDSEIREN NGMVTDIQDL RKSRLIWTMQ LHRQFIAAVN SLGADKAVPK  180
KILEIMKVKH LTREQIASHL QKYRLHLRNS TQTLHKDDTP SSSSYPNNES SILRTQLNSS  240
SNSLYFDQDG CMEITDYSLP KDDLSSGSEC ILGERNNYSP ECFQDFRWDS DKQGSETTYL  300
WNFEAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17151208461ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG213000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797974.10.0two-component response regulator EHD1-like isoform X1
SwissprotQ7Y0W31e-121EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A3L6TQX90.0A0A3L6TQX9_PANMI; Uncharacterized protein
STRINGSi039992m1e-177(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-48response regulator 2