PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG074600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 857aa    MW: 93095.9 Da    PI: 6.5847
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG074600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-183087457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pavir.9KG074600.1.p 30 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87
                         6789****************************************************97 PP
2START171.84.4e-541783852204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi  g  g
  Pavir.9KG074600.1.p 178 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPMGngG 266
                          68999*****************************************************.8888888888***************99999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl+++
  Pavir.9KG074600.1.p 267 TIELIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAW 356
                          ***************999****************************9999999************************************* PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          +++++lr+l++s  + ++kt+ a+l++ +
  Pavir.9KG074600.1.p 357 SVPEVLRPLYESPKILAQKTTIAALRHIR 385
                          ************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4352488IPR001356Homeobox domain
SMARTSM003892.6E-152692IPR001356Homeobox domain
SuperFamilySSF466896.84E-172891IPR009057Homeodomain-like
CDDcd000863.04E-162989No hitNo description
PfamPF000465.1E-163087IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-183187IPR009057Homeodomain-like
CDDcd146861.82E-681120No hitNo description
PROSITE profilePS5084826.907168368IPR002913START domain
CDDcd088755.24E-69172388No hitNo description
Gene3DG3DSA:3.30.530.201.7E-24176360IPR023393START-like domain
SMARTSM002346.2E-46177387IPR002913START domain
SuperFamilySSF559611.07E-38178388No hitNo description
PfamPF018527.6E-52178385IPR002913START domain
SuperFamilySSF559618.52E-5425509No hitNo description
SuperFamilySSF559618.52E-5539612No hitNo description
PfamPF086701.8E-50713855IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MAAAMVVGGA GKDRSSPGGG GAPQVDTGKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI  60
RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS  120
RLVYENGYMK QQLHNPSVAT TDTSCESVVT SGQHHQQQNA AAPRPQRDAN NPAGLLAIAE  180
ETLAEFLSKA TGTAVDWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI  240
LKDRPSWYRD CRCVDILHVI PMGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS  300
LVICERSLTQ STGGPSGPNT PNFVRAEVLP SGYLIRPCEG GGSMIHIVDH VDLDAWSVPE  360
VLRPLYESPK ILAQKTTIAA LRHIRQIAHE SSGEMPYGGG RQPAVLRTFS QRLSRGFNDA  420
VNGFPDDGWS LMSSDGSEDV TIAINSSPNK LVGSHVNSSQ LFSAIGGGIL CAKASMLLQN  480
VPPALLVRFL REHRSEWADP GIDAYSAAAL RASPYAVPGL RASGFMGSQV ILPLAHTLEH  540
EEFLEVIRLE GHSLCHDEVV LSRDMYLLQL CSGVDENAAG ACAQLVFAPI DESFADDAPL  600
LPSGFRVIPL DAKTDPPSGT RTLDLASTLE VGSGGTTRAS SDASSTCNTR SVLTIAFQFS  660
YENHLRESVA AMARQYVRTV VASVQRVAMA IAPSRLGGQL EMKQTPGSPE AHTLARWIGR  720
SYRFHTGAEL LRADTQCTDA SLKALWQHSD SIMCCSLKAA PVFTFANQAG LDMLETTLIA  780
LQDISLEKIL DDDGRKALCT EYPKIMQQGF AYLPGGVCVS SMGRPVSYEQ AVAWKVLSDD  840
DTPHCLAFMF VNWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.32750.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG074600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982339.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A3L6TJE30.0A0A3L6TJE3_PANMI; Homeobox-leucine zipper protein HOX32
STRINGPavir.Ib04083.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]