PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG063000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 355aa    MW: 38922.4 Da    PI: 7.9886
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG063000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix643.4e-2040110272
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                          Wt  e+++Liea+r+++e+  rg +  ++W++v +++++ g++rs +qC+++w+nl ++ykk+++ e  ++
  Pavir.9KG063000.1.p  40 WTLPETMLLIEAKRKVHEERHRGDQGLARWRWVEDYCWRAGCRRSHNQCNDRWDNLMRDYKKVRAYEAAGA 110
                          ****************************************************************9998874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.0023296IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-43598IPR009057Homeodomain-like
SuperFamilySSF466898.97E-73597IPR009057Homeodomain-like
PfamPF138376.6E-1438120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDGGSRALLS QTGDEQSRRS VVMAGAGALT VARDYRRGNW TLPETMLLIE AKRKVHEERH  60
RGDQGLARWR WVEDYCWRAG CRRSHNQCND RWDNLMRDYK KVRAYEAAGA GAGAAPSYWA  120
MGRAERKEKG LPSNLLREIY DAMGEVIIER RMSLGGGGAG AGGASSSLLD VPMQASPLAQ  180
FLPRSLHLEQ EARHHEYGVA HFSSPESPER KRRRPSLDEL RPGTGSSTPP APVGPHVVHR  240
QEQGHRHRED DDDHGRRDGE SSDSDEEEEI LGGAIGRCAA ILSEALESRE AAEERRHREV  300
MAVEERRGRA LQARREAGEQ CVAGLAAAVN QLAGSMLALA AAKHKDKGGA APPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209213RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG063000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836021e-159BT083602.1 Zea mays full-length cDNA clone ZM_BFb0018E14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792444.10.0uncharacterized protein LOC112873645
TrEMBLA0A2T7C2T10.0A0A2T7C2T1_9POAL; Uncharacterized protein
STRINGPavir.Ib04194.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.18e-40Trihelix family protein