PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG016100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 400aa    MW: 44147.6 Da    PI: 4.7297
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG016100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-18164216156
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Pavir.8NG016100.2.p 164 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 216
                          89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-481135IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-18164225IPR016177DNA-binding domain
CDDcd000183.03E-25164225No hitNo description
PfamPF008471.5E-13164215IPR001471AP2/ERF domain
PROSITE profilePS5103218.663165223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18165223IPR001471AP2/ERF domain
SMARTSM003802.6E-24165229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGMERSSQPS PPPPVSSPPS SSSSSISAEE IPQRKRARAH KGSRADKPKR PRKEAPRQTQ  60
TKDDPADPAA PNAAAAKRSS VYRGVTRHRW TGRFEAHLWD KHCLTSLQNK KKGRQALKYW  120
GPETVLNFPA EDYSGEMSEM EGVSREEYLA SLRRRSSGFS RGVSKYRGVA RHHHNGRWEA  180
RIGRVFGNKY LYLGTFDTQE EAAKAYDLAA IEYRGANVVT NFDISCYLDH PQLLAQLQQE  240
PQVVPALNQE PQPDQSETTV QESDSSEVKT PDDIAKPDAN AQPDDSAEPL TVDDSAEPLT  300
VNDSIYESLW SPCMDYELDI MSSSNFGSSI NLSEWFADAD FGSDIGCLFD GCFAVDEGSK  360
DDVGLADFSL FDEGDGKQKD VISDMEEGIH PSTIISVCN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753PKRPRKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.300790.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG016100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381841e-155BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269101e-155KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807914.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2S3H5G50.0A0A2S3H5G5_9POAL; Uncharacterized protein
STRINGSi026433m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-67AP2 family protein