PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG125000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 30572.5 Da PI: 6.2438 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 155 | 203 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr + +g+++AeIrd s++g +r++lg+fgt+e+Aa a+++a+ +++g Pavir.8KG125000.1.p 155 IGVRKPP-WGKFAAEIRD-STRG-GARVWLGTFGTPEDAALAYDQAAFAMRG 203 59*9766.**********.3433.4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.928 | 153 | 211 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 154 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-20 | 154 | 212 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.8E-12 | 155 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-30 | 156 | 217 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-25 | 156 | 212 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.39E-27 | 156 | 211 | No hit | No description |
PRINTS | PR00367 | 2.8E-6 | 177 | 193 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEPSCYNSSY SHCYYEDGDT IVSAARMIIM YTVVATTLYH LAPPNRVGPL LPLLSNLAPI 60 LLPLMATTRS SSSGVLEEQS SYQEDSMSME HFSALMGAAC ISTCSSFSLE ANAKLNDARS 120 TMTTSSPAAP ARPPSTTVDE PGGDQHQQSP PPPLIGVRKP PWGKFAAEIR DSTRGGARVW 180 LGTFGTPEDA ALAYDQAAFA MRGPTAVLNF PLQRVRESLH ALGLSASRHR IRKRTQNKSK 240 TAASTGTKKQ ASDGLLELED LGLDYLEELL GLSDSASPAP SVPWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-24 | 156 | 213 | 5 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG125000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791720.1 | 3e-48 | ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A2T7C6R1 | 1e-48 | A0A2T7C6R1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J32493.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-21 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG125000.1.p |