PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG057900.4.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 304aa MW: 32331 Da PI: 6.7947

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG057900.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.6	6.6e-42	24	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rF Pt+eel+ +yL+++++g+ ++e+ i+ vdiy+++P++L++ +++ ++++w+fF++r++++ +g r+ r+t sgyWkat Pavir.8KG057900.4.p 24 LPPGYRFYPTEEELLGFYLRHRLAGTGPQVEHLIPVVDIYSHHPSQLRAmagAANVgDKEQWFFFCPRAERELNGGRPARTTPSGYWKAT 113 79**************************899**********85345223335669************************* PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s+ +++++g k+t+vfy+grap+g+kt+W m+ey++ Pavir.8KG057900.4.p 114 GSPSYVYSAppTSRAIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 157 ****9999999*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-46	22	183	IPR003441	NAC domain
PROSITE profile	PS51005	47.648	24	183	IPR003441	NAC domain
Pfam	PF02365	3.7E-22	25	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MSMLLQRAME SSNRSGSDDH DPVLPPGYRF YPTEEELLGF YLRHRLAGTG PQVEHLIPVV 60 DIYSHHPSQL RAMAGAANVG DKEQWFFFCP RAERELNGGR PARTTPSGYW KATGSPSYVY 120 SAPPTSRAIG EKRTMVFYQG RAPTGTKTRW KMNEYKAVAA DDAPPGAAVR LRNEFSVCRV 180 YTSNGTLRSF DRRPLNPPAA GVDDQTAAAH RCQEQEAPPP PPAAAGSQMA AVDVVVAAAN 240 GGQSSDEHSH GGSSSSGSLG AVVDGAGAAA AAAAIDWDSL IPPVDYLRFG GADALSHVVW 300 PPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-30	16	186	8	171	NAC domain-containing protein 19
3swm_B	1e-30	16	186	8	171	NAC domain-containing protein 19
3swm_C	1e-30	16	186	8	171	NAC domain-containing protein 19
3swm_D	1e-30	16	186	8	171	NAC domain-containing protein 19
3swp_A	1e-30	16	186	8	171	NAC domain-containing protein 19
3swp_B	1e-30	16	186	8	171	NAC domain-containing protein 19
3swp_C	1e-30	16	186	8	171	NAC domain-containing protein 19
3swp_D	1e-30	16	186	8	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG057900.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828030.1	1e-135	NAC domain-containing protein 90-like isoform X3
Swissprot	Q9FMR3	3e-61	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2S3ICK2	1e-133	A0A2S3ICK2_9POAL; Uncharacterized protein
STRING	Pavir.Hb01808.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	8e-64	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Pavir.8KG057900.4.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]