![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.8KG057900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 36152.5 Da PI: 7.3233 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.3 | 8.4e-42 | 58 | 191 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rF Pt+eel+ +yL+++++g+ ++e+ i+ vdiy+++P++L++ +++ ++++w+fF++r++++ +g r+ r+t sgyWkat Pavir.8KG057900.2.p 58 LPPGYRFYPTEEELLGFYLRHRLAGTGPQVEHLIPVVDIYSHHPSQLRAmagAANVgDKEQWFFFCPRAERELNGGRPARTTPSGYWKAT 147 79****************************899**************85345223335669***************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s+ +++++g k+t+vfy+grap+g+kt+W m+ey++ Pavir.8KG057900.2.p 148 GSPSYVYSAppTSRAIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 191 ********9999999***************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-46 | 56 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.648 | 58 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-22 | 59 | 190 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MASVASSKLL SNLLLHRQGV CGERPRRYID LIEIMSMLLQ RAMESSNRSG SDDHDPVLPP 60 GYRFYPTEEE LLGFYLRHRL AGTGPQVEHL IPVVDIYSHH PSQLRAMAGA ANVGDKEQWF 120 FFCPRAEREL NGGRPARTTP SGYWKATGSP SYVYSAPPTS RAIGEKRTMV FYQGRAPTGT 180 KTRWKMNEYK AVAADDAPPG AAVRLRNEFS VCRVYTSNGT LRSFDRRPLN PPAAGVDDQT 240 AAAHRCQEQE APPPPPAAAG SQMAAVDVVV AAANGGQSSD EHSHGGSSSS GSLGAVVDGA 300 GAAAAAAAID WDSLIPPVDY LRFGGADALS HVVWPPN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-30 | 50 | 220 | 8 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-30 | 50 | 220 | 8 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-30 | 50 | 220 | 8 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-30 | 50 | 220 | 8 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-30 | 50 | 220 | 8 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-30 | 50 | 220 | 8 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-30 | 50 | 220 | 8 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-30 | 50 | 220 | 8 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.8KG057900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828030.1 | 1e-134 | NAC domain-containing protein 90-like isoform X3 | ||||
Swissprot | Q9FMR3 | 5e-61 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2S3ICK2 | 1e-133 | A0A2S3ICK2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01808.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44350.2 | 2e-63 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.8KG057900.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|