PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG270400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 359aa    MW: 38447.1 Da    PI: 4.5853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG270400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17136186356
                  AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+++AeIrd       r  r++lg+++t+ eAa+a ++a+ +++g+
  Pavir.7NG270400.1.p 136 YRGVRQRP-WGKYAAEIRDlK-R---RgSRVWLGTYDTPVEAARAFDRAAFRMRGA 186
                          9*******.**********44.3...24**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-30135194IPR001471AP2/ERF domain
PROSITE profilePS5103222.471135193IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-21135195IPR016177DNA-binding domain
SMARTSM003801.1E-32135199IPR001471AP2/ERF domain
PfamPF008473.3E-12136185IPR001471AP2/ERF domain
CDDcd000189.44E-19136194No hitNo description
PRINTSPR003675.5E-10136147IPR001471AP2/ERF domain
PRINTSPR003675.5E-10159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAEHLLGGGC GGVAALVSDD VIFPELPPQP EFDPISFLLP QQLEQQHQVF MGKDLTHEYM  60
GGAPAAPSVG EAAALPDKEP AAPMIVNFGS ERSSVVRKPA LTISVPPRLY ARAATASAAT  120
AAAPAAAAVV EDFRMYRGVR QRPWGKYAAE IRDLKRRGSR VWLGTYDTPV EAARAFDRAA  180
FRMRGAKAIL NFPDEVGTRG ANFCAPPPAP ATAAAAASSK RKRQQLEDPD DVEVIPVVNI  240
GVTEALLSCH KKPAAAPRRV YNIFYDEDDE EDMAMAPPLA VDRPEPGASE KAKEPEEISS  300
GEDICGGFGH TQSSELPKVE EAAPETEASE DPDNATIGHD ATHEVLLAES QRKQSFDDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-241361961575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG270400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275252e-93KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826258.11e-84ethylene-responsive transcription factor 6-like
TrEMBLA0A3L6Q8794e-92A0A3L6Q879_PANMI; Uncharacterized protein
STRINGPavir.J23730.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-21ethylene responsive element binding factor 5