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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7NG270100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 333aa MW: 35525.9 Da PI: 4.808 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7NG270100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 63.7 | 4e-20 | 135 | 186 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +++g+
Pavir.7NG270100.1.p 135 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 186
8********.**********96554..**************************95 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MEFIGDADGF GLDFIRDLLL GGDGRDAPVV SDDVTFPVLQ PQPEFQPMSS FLPQQQGQGY 60 GYIDLTQEYT APAPVAPALG EAVFRAQEPA PPVMIKFGSE PPSPVSVQPP LTISVPPSSY 120 AWAGAAPAAV EDYRKYRGVR QRPWGKYAAE IRDPKRRGSR VWLGTYDTPV EAARAYDRAA 180 FRMRGAKAIL NFPNEVGTRG ADLWAPPPPP APATQAAAAA NKRKRQHPED TDDVEVVAVV 240 NKAVKREEAP PPPPSTQVPS PSPSSMSTRE TTVSSTVTST ATETSAGAEC LSVTPSSGSS 300 WEQYWEALLG GLPPLSPLSP HPTLGFPQLI VN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727525 | 1e-101 | KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds. |