![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7KG320000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LFY |
Protein Properties |
Length: 318aa MW: 34481.1 Da PI: 9.7503 |
Description |
LFY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7KG320000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Pvi&pid=Pavir.7KG320000.1.p) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FLO_LFY | 463.1 | 2e-141 | 1 | 304 | 81 | 385 |
FLO_LFY 81 mkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglge 170
m+++eldd+m++l+ +fr+d+l+Ger+G++aa+raer r+++ r + ++lda+s+e+ls+e++ aagsgg + e
Pavir.7KG320000.1.p 1 MTERELDDMMAALAGLFRWDVLLGERFGLRAALRAERGRVMSLG---GRF-----HAGSTLDAASEEVLSDERD-----AAGSGGVAEDE 77
9****************************************965...455.....35678***********976.....77888888777 PP
FLO_LFY 171 aelvaaeekkseeekkkaskkkqkrkkkkelkse.......ededeeeeededeeg..........sgedgeerqrehPfivtepgevar 243
a+ +++ kk+ ++ ++k +k ++kkel+ + + +ed + g ++ +g erqrehPf+vtepgevar
Pavir.7KG320000.1.p 78 AGRRMVTGKKQAKKGAAGTRKGKKARRKKELR-PldvlgdeN----DGDEDGGGGGgsestessagGRGGGGERQREHPFVVTEPGEVAR 162
77777776554444443333322222222222.124554331....22222222223344444543555667****************** PP
FLO_LFY 244 gkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenv 333
+kknGLDYLf+LyeqCr fLlqvq+iak G+k+Ptkvtnqvfryakk+gasyinkPkmrhYvhCYalhcLdeeasnalrra+k+rgenv
Pavir.7KG320000.1.p 163 AKKNGLDYLFHLYEQCRVFLLQVQSIAKLGGHKAPTKVTNQVFRYAKKCGASYINKPKMRHYVHCYALHCLDEEASNALRRAYKARGENV 252
****************************************************************************************** PP
FLO_LFY 334 GawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
Gawrqacy+plv+iaar+g+d+davf+ahprL+iWYvPt+LrqLCh++r ++
Pavir.7KG320000.1.p 253 GAWRQACYAPLVEIAARHGFDVDAVFAAHPRLAIWYVPTRLRQLCHQARGAQ 304
************************************************9876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MTERELDDMM AALAGLFRWD VLLGERFGLR AALRAERGRV MSLGGRFHAG STLDAASEEV 60 LSDERDAAGS GGVAEDEAGR RMVTGKKQAK KGAAGTRKGK KARRKKELRP LDVLGDENDG 120 DEDGGGGGGS ESTESSAGGR GGGGERQREH PFVVTEPGEV ARAKKNGLDY LFHLYEQCRV 180 FLLQVQSIAK LGGHKAPTKV TNQVFRYAKK CGASYINKPK MRHYVHCYAL HCLDEEASNA 240 LRRAYKARGE NVGAWRQACY APLVEIAARH GFDVDAVFAA HPRLAIWYVP TRLRQLCHQA 300 RGAQHAAAAG LPPPPMF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: In the vegetative phase, expressed in shoot meristems and leaf primordia. In the reproductive phase, present in the meristems of primary and secondary branches at primordial and elongating stages, but later transiently down-regulated from the meristems, when the meristem identity change from inflorescence to spikelet. Subsequent expression recovery when spikelets are differentiated, with an accumulation in floral meristems and in primordia of all floral organs, including lodicules, stamens, carpels and ovules. {ECO:0000269|PubMed:21910771}. |
Uniprot | TISSUE SPECIFICITY: In very young panicle but not in mature florets, mature leaves, roots or apical meristems. {ECO:0000269|PubMed:9482818}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY179882 | 0.0 | AY179882.1 Zea mays cultivar A632 floricaula/leafy-like 1 (fl1) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G61850.1 | 3e-97 | floral meristem identity control protein LEAFY (LFY) |