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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG276500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 29613.1 Da PI: 5.4189 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.2e-21 | 136 | 185 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + r +lg+f+taeeAaka+++a+ +++g Pavir.6NG276500.1.p 136 KYRGVRQRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEEAAKAYDRAAIEFRG 185 8********.**********7.....338************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.895 | 136 | 193 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-38 | 136 | 199 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 136 | 194 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.0E-14 | 136 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 136 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 137 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.30E-29 | 139 | 193 | No hit | No description |
PRINTS | PR00367 | 3.0E-11 | 159 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MTNRIFSAMA GDQAYMIRFD GHFDDPTPSS AGAEPLAMPQ PPPFAGRVIS PEQEHQVIVA 60 ALLHVVSGYT TAPPEIFPPA AAACRVCGME RCLGCEFFGA EGAAAIALDG AASNVAGAPG 120 AAAAAGQRRR RKKKNKYRGV RQRPWGKWAA EIRDPHRAVR KWLGTFDTAE EAAKAYDRAA 180 IEFRGPRAKL NFPFPEPPAG HDEASNGDAS AAAKSSDNTL SLSPSLCSGD AEERGQPAEW 240 PLGGQETGEQ LWEGLQDLMR LDEAELWFPP TSNAWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 133 | 194 | 2 | 64 | ATERF1 |
3gcc_A | 6e-21 | 133 | 194 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 133 | RRRRKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG276500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821277.1 | 1e-150 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 2e-32 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A3L6RLI7 | 1e-152 | A0A3L6RLI7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J19559.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-28 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG276500.1.p |
Publications ? help Back to Top | |||
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