PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG228200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 272aa    MW: 29229.7 Da    PI: 9.0255
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG228200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91e-1287135254
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          +y+GV+  ++ grW+Ae r       + r+++g+f t+eeA++a++ + ++++
  Pavir.6NG228200.1.p  87 RYRGVY-ERQPGRWAAEFRSH---RLKVRHWVGTFATEEEAKAAYDPFERQFH 135
                          7****8.777*******5553...245*******************8887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.85487144IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1187136IPR016177DNA-binding domain
CDDcd000181.27E-1187128No hitNo description
Gene3DG3DSA:3.30.730.107.4E-1487134IPR001471AP2/ERF domain
PfamPF008479.7E-987130IPR001471AP2/ERF domain
SMARTSM003803.2E-587149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEARRIRIFF SDPDATDSDS GYDPTSDVCA PTKSAGKTEL VILQCNSRTN TRAKMNPAGC  60
GRPQAIGSLA LAAAGSRAVG SAPTARRYRG VYERQPGRWA AEFRSHRLKV RHWVGTFATE  120
EEAKAAYDPF ERQFHSSPRC GPPPSSSKRG ANAGGVRRAS NPPPDEKRQI VLALTTAATT  180
RMLPPSSAGA TAASVCVSSS TSASPPPPPL FRDARRRDDV PRRLHSIWAD EPADEDIVGL  240
ADLAHLPLPR FSDVSMDFDP ADLSLFDNGF L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG228200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822361.11e-147ethylene-responsive transcription factor ERF073-like
TrEMBLA0A270R5R51e-146A0A270R5R5_9POAL; Uncharacterized protein
STRINGPavir.Fa01379.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.12e-09ERF family protein