PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG163800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 305aa    MW: 32188.3 Da    PI: 6.9892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG163800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.1e-183175145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         krie    r+v fskRr g++KKA EL  LC+a vav++fs  +k
  Pavir.6KG163800.1.p 31 KRIEGVAARHVCFSKRRSGLFKKAAELAALCGAHVAVVVFSRADK 75
                         7999999**********************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-232393IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-242382IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.8292383IPR002100Transcription factor, MADS-box
CDDcd002653.38E-312492No hitNo description
PRINTSPR004042.5E-162545IPR002100Transcription factor, MADS-box
PfamPF003191.6E-213278IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-164560IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-166081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAEAAERRRG EAGGEQRKRK KTLGRQKIEI KRIEGVAARH VCFSKRRSGL FKKAAELAAL  60
CGAHVAVVVF SRADKPYSLG IPSVDAVVDR YLYPASAAAG EAPAGGADPA VLEEFESEKE  120
RLDKAIAAEA RRREALIAAA RAAGVPDGDD VRRAGMPDLL ATLAALERVR AEAMQRVRVH  180
EAMVEEMTMQ QCAVAVSGDA GGAFYCAAGA GAFAADGGAS SSSSHQGVLY TQMLMGGDAN  240
HASMPFAPTK PPYLPPPPFN YGSHHNQFAC YGYDIGDDGS CHDAAAAYGM EGYHGTTTTC  300
NFFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620RRRGEAGGEQRKRKK
21620RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG163800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813008.11e-133MADS-box protein AGL71-like
TrEMBLA0A2T7DXF81e-133A0A2T7DXF8_9POAL; Uncharacterized protein
STRINGPavir.Da00770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-23AGAMOUS-like 61