PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG463600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 167aa    MW: 16812 Da    PI: 10.429
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG463600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof924.7e-2981136458
               zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 
                          + l+cprC s++tkfCy+nny++ qPr++C+aCrryWt+GGalr v   + grr+ 
  Pavir.5NG463600.1.p  81 EPLPCPRCGSRETKFCYFNNYNVRQPRHLCRACRRYWTAGGALRRVASASpGRRRP 136
                          5789*****************************************98766255544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.1E-2682135IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.52783137IPR003851Zinc finger, Dof-type
PROSITE patternPS01361085121IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-1885126IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MADLPDANAA GFKLFGKVIQ PPDAHRAAEA GADPPQPLTT TTAAAAVLPP PQPQSPPLPP  60
PALQLQAAGA GAAAGAGGAG EPLPCPRCGS RETKFCYFNN YNVRQPRHLC RACRRYWTAG  120
GALRRVASAS PGRRRPRPAA RSAAAAAAIA TASSATAAAE EGGGER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG463600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546095e-99EU954609.1 Zea mays clone 1473007 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969505.12e-52dof zinc finger protein 5-like
TrEMBLA0A368R9175e-51A0A368R917_SETIT; Uncharacterized protein
STRINGSb03g030850.11e-47(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147161620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.12e-21Dof family protein