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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG035200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 847aa MW: 94553.8 Da PI: 8.9549 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 46 | 86 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W+++E ++++a +++G++ Wk+I++ + g++ +++s + Pavir.5NG035200.1.p 46 KWSKDELTQFYEAYRRHGKD-WKKISSAVR-GKSSDMVRSLYS 86 8*****************99.*********.*******99665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.26E-10 | 40 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.496 | 42 | 99 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-4 | 43 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.10E-6 | 46 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-4 | 46 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-8 | 46 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF06584 | 2.3E-31 | 477 | 577 | IPR033471 | DIRP domain |
SMART | SM01135 | 1.9E-38 | 477 | 578 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MAPAKGSRTI NKTIIKGYED QRQYDDPPSS SKAKQKKRKI SDLNPKWSKD ELTQFYEAYR 60 RHGKDWKKIS SAVRGKSSDM VRSLYSVHRT FLSLPERQAT AIGFIALVTG HHNASEKSTS 120 HIGDDRMIRA SGKARHRGEA IQQKATERPD LHDHHEGTIA GFSSSFKKRY YGDLVRNIRN 180 HAVRRRTPRI PVIAPAVKNT IDEASPDRSS RITETNKAGQ DHIFLDTKAT GDSAICQQQL 240 KKTRIQQPTQ QGQTIKVEHE TVMASDDGNK LVDSLNQHHI ERNIISEDDM LVLDVLNSLV 300 NAPSKTSKLE IKVPSGSHGK TDSVLSDRRE KGQPTIDLSK LGKAIGKSSA SKTGKKRHKK 360 LLDAEVPAEA QNISVNNLVL PEAPKVGITD DSSLWCTDSA RVGIPEASED ISTKAPSAAT 420 EIKPEIRMSR RTRRKYQMQC KTKHVSCNED SDNLQAKKLL HCLSSESLRR WCTYEWFYSA 480 VDYPWFSDNE FVHYLNHAKL SHLSRLTRSE WSAIRSSLGK PRRFSDHFLA VEKEKLEDYR 540 EKVRKIYAQL RDGSRDSLPA DLARPFSIGQ EVIVRHPSSR ELCDGKVVMM GPDCYKVHFV 600 NPDLGVDIVK DTDCMPVNWL YNHPDNMRRS CLSNNVYSIM EAEHIPDLAP SENWDLAVHG 660 VTVTSDKQLK VESGVNGERP PYWSTSNGRP TKSGGCPDDD AGHDDELESS ILAFVQKSLS 720 QARQMVDEAM KANSEGSDVR VRMPNQETDC VGPQYEAAIR GAQLPSNLIA NCIATILSIK 780 RLSDSRHPFA SIAGVLEHAS SMLRPSCPEN LAIYKDIETY ISVIANQILA LVPTALGNCG 840 PPMSPM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15733 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG035200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816481.1 | 0.0 | protein ALWAYS EARLY 3-like | ||||
TrEMBL | A0A2S3HZA0 | 0.0 | A0A2S3HZA0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J02622.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8696 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 7e-63 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG035200.1.p |