PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG013500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 470aa MW: 49373.5 Da PI: 8.3911 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.3e-30 | 230 | 288 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a Cpv+k+v+r+aed +++++tYeg+Hnh+ Pavir.5NG013500.1.p 230 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAsACPVRKQVQRCAEDRSILITTYEGTHNHP 288 7***************************999***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 214 | 290 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-27 | 222 | 290 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.77 | 224 | 290 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-35 | 229 | 289 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-27 | 231 | 288 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MGDNKLGQLL ALDASPRPLA LLHLPPRGMS ADHHPAGGSS SLRRQRSSVE VDFFSDDKHK 60 EGAPPGLAIN KEDLTINLLA AAAGDSSINK EDTKKMVQQQ LPALQAELGR MNEENQRLRG 120 MLAQVTTSYQ ALQMHLLALM QPQPQPIPHL PPPPPRQPEE PASNSSTEVV GSPRRSSSTG 180 NNKDHLQLQA DSPDAAGWLP AEGRQQQQQE ASMRKARVSV RARSEAPIIA DGCQWRKYGQ 240 KMAKGNPCPR AYYRCTMASA CPVRKQVQRC AEDRSILITT YEGTHNHPLP PAAMAMASTT 300 SAAASMLLSG SMPSADGTPM TSNSFLARAV LPCSSSMATI SASAPFPTVT LDLTHGPPSA 360 AAARPAPLAP TQFHHLPLYN QSTKFSGLHM SSSPSAADAP PIGIGGLADT VSAAAAAITA 420 DPNFTVSLAA AISSIIGGGG QQQLHGLQGA NNNNNNVTSS SNNTNSETQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 216 | 292 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9041 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG013500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085752 | 1e-132 | BT085752.2 Zea mays full-length cDNA clone ZM_BFc0057C03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817237.1 | 0.0 | WRKY transcription factor 6-like isoform X3 | ||||
Swissprot | Q9C519 | 1e-105 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A3L6SNC2 | 0.0 | A0A3L6SNC2_PANMI; WAKY 1 protein | ||||
STRING | Pavir.Eb00086.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-66 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG013500.1.p |