PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG000600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 461aa    MW: 48577.2 Da    PI: 8.6866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG000600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30207265259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  Pavir.5KG000600.1.p 207 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAnACPVRKQVQRCAEDRSILITTYEGTHNHP 265
                          7***************************999***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-33192267IPR003657WRKY domain
SuperFamilySSF1182902.09E-27200267IPR003657WRKY domain
PROSITE profilePS5081128.552201267IPR003657WRKY domain
SMARTSM007749.8E-36206266IPR003657WRKY domain
PfamPF031066.5E-27208265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSASADHQAG GSSSSLLRRR RSVEVDFFSD VGKDKEKMPD PPPSPPGGLG LAIKEDLTIN  60
LLVPAATRRD HEDKKTMAVQ QQQQLPALQA ELGRMNEENH RLRGMLAQVT TSYQALQMHL  120
LALQMQQPTI PQQQPPPPPS NNSSTEVVGS PRRSSSATGN NKDLRQAPDS PDAAAAGWLP  180
AQGRQQEASM SKARVSVRAR SQAPIIADGC QWRKYGQKMA KGNPCPRAYY RCTMANACPV  240
RKQVQRCAED RSILITTYEG THNHPLPPAA MAMASTTSAA ASMLLSGSMP SADGTNSFLA  300
RAVLPCSSSM ATISASAPFP TVTLDLTTHG PPPFHLPHAQ PPLYSDNHSS STTKFSGLHM  360
SSSDTQHAPS AADAATCRPP PPIGIDDTVS AAAAAITADP NFTVALAAAI TSIIGGGGRG  420
HHHHHHGLQQ AGANNNSNNN NVTSSSNNTA TSNNTNSETQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20193269176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.90411e-119callus
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG000600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0857521e-156BT085752.2 Zea mays full-length cDNA clone ZM_BFc0057C03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817236.11e-163WRKY transcription factor 6-like isoform X2
SwissprotQ9XEC32e-94WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A3L6SNC21e-169A0A3L6SNC2_PANMI; WAKY 1 protein
STRINGPavir.Ea00058.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.18e-69WRKY family protein