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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.4NG245700.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 312aa MW: 32898.8 Da PI: 8.0163 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.4NG245700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 60.6 | 3.4e-19 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+W++eEd+ l ++v+++G ++W++I r+++ gR++k+c++rw +
Pavir.4NG245700.1.p 11 RGPWSPEEDDALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 56
89******************************.***********985 PP
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2 | Myb_DNA-binding | 55.1 | 1.7e-17 | 63 | 105 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
r ++T+eEd +v+a+++lG++ W++Iar ++ gRt++ +k++w+
Pavir.4NG245700.1.p 63 RRPFTAEEDAAIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 105
679*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MGAEAECDRI RGPWSPEEDD ALRRLVERHG ARNWTAIGRE IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTAEE DAAIVRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNCSLKR KLDAAAAASS 120 GAGADGAELE ARPCKRLSLS PDSPSSGSGT VSDRSDLSHG AGSGSGSWQL FRPVPRSGGF 180 EPADCAMSRP AEDDDPLTSL SLSLPGTDQR FHHDRAHSQF QELPASPSPP SPSPPPPSAA 240 AAAAPSAYPF SPDFMAAMQE LIRAEVQRYM AGAGVRAGCG PAGGAGLCMP QLVEGVMRAA 300 AERVGAVARI Q*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HF679429 | 1e-161 | HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein. |