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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.4NG182600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 398aa MW: 42438 Da PI: 7.9482 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.4NG182600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.3 | 2.7e-05 | 182 | 201 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
Pavir.4NG182600.1.p 182 FSCPVCYKTFNRYNNMQMHM 201
89*****************9 PP
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| 2 | zf-C2H2 | 14.1 | 0.00014 | 266 | 288 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk F + + ++H +++
Pavir.4NG182600.1.p 266 FMCRKCGKAFAVRGDWRTHEKNC 288
89*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 398 aa
Download sequence Send
to blast |
MGDPYTNFLR GYYSHFPPSF PTSSYASSYL HPPPPSPPIR EALPLLSSLT PSSSAANHHQ 60
HHDEVARDHK ACSRATSCRG QDAADQAAGE VTVALHIGLP SPSPSESAAG GGDTREPAAE 120
GSSSLQQPGD GHEGGGDGEE DADDGEDAAM AVGCASIGIG RLTKGQYWIP TPSQILIGPT 180
QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAAGCRNNID 240
HPRARPLKDF RTLQTHYRRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCACGSDF 300
KHKRSLKDHI RAFGRGHAAC GIDCFDDLDD DDRDPSSEVD HAAGAGGGGG AAATNHTSSN 360
TAASAAAATA GGASSRRHHH WKPPPPPSRG SGGDRLL*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243261 | 0.0 | AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence. |
