PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG331700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 182aa    MW: 18863.8 Da    PI: 5.0293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG331700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.21e-133580151
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                         +gy+GVr+ +  g+W AeIrdp +   + r +lg++ ta eAa a++ a++
  Pavir.4KG331700.1.p 35 PGYRGVRR-H-YGKWGAEIRDPLD---SERAWLGTYATAAEAAYAYDIAAR 80
                         79****95.4.7*********955...5********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-63579IPR001471AP2/ERF domain
SMARTSM003806.5E-193698IPR001471AP2/ERF domain
PROSITE profilePS5103218.0573692IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-163693IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-233793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDGVLGDFCQ LVRWAAAAAA AERAAAGLPP HPESPGYRGV RRHYGKWGAE IRDPLDSERA  60
WLGTYATAAE AAYAYDIAAR VVQGSRARPN FPMAPPVPGD DEDAAAAAVL AYFAEVRHAR  120
LSRAERRRAQ AAAEAAAAAA PTAVPSAPEA SPAQNQSAPE GEHLPPCTAD ASNTDAVADH  180
E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG331700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811436.11e-69ethylene-responsive transcription factor ERF055-like
TrEMBLA0A2T7DW772e-70A0A2T7DW77_9POAL; Uncharacterized protein
STRINGPavir.Db00700.1.p2e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2289355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-09ERF family protein