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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG233600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 20835.6 Da PI: 6.808 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.6 | 6.5e-08 | 11 | 56 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++ +r +f kRr++++ A LS +a vavi fs+ g+ y + Pavir.4KG233600.1.p 11 DSEHQRRESFRKRRATLFGMARDLSEEFGAHVAVIAFSPAGEPYAF 56 67889999*********************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0017 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.619 | 6 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-12 | 6 | 71 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-12 | 12 | 56 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MAKDKELRPC DSEHQRRESF RKRRATLFGM ARDLSEEFGA HVAVIAFSPA GEPYAFGAPT 60 ADSVLRTYLP AADGPAPNPT PHAPSPGAAA GVGAETAGQA AARVAGMRRE VDETKALVTE 120 EWARVAAALE KVRAAQRAAQ KQNWWEVDVE ALGEEELPVF MRALEMLKAE VQERINAMAS 180 ARMSLPGVRK QQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG233600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813917.1 | 1e-104 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2T7DY99 | 1e-103 | A0A2T7DY99_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da01716.1.p | 1e-135 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7989 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-12 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG233600.1.p |