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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.3KG495500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 411aa MW: 46612.3 Da PI: 10.3346 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3KG495500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 274.6 | 3.1e-84 | 85 | 399 | 74 | 373 |
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg..skeel 158
++++l+a++l+ + + k +l Nq+I++a g++r+Hi+D++i +GlQWp++l+ +a+Rp ++pp++RiTg++ p+ g ++++
Pavir.3KG495500.1.p 85 VADVLQAYQLYMSAICFKKAFYLFSNQTIYRASLGKKRIHIVDYGIHYGLQWPCFLRRIACRPdgaGPPPEVRITGIDLPQRGfhPAQRV 174
88999**********************************************************8877899***********9999***** PP
GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.........gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkv 238
eetg+rL+k+A+e+gvpf+++v++a+r+e+++ e+L+++ +E+l+Vn+++ql++l+desvs+es +rd L +++++P+
Pavir.3KG495500.1.p 175 EETGRRLSKYAQEFGVPFSYQVIAASRMETIRAEDLNLNLnlnpygdddDEVLIVNCIFQLENLMDESVSMESsPRDVALGNIRRMRPHA 264
**********************************997765566699999***********************999*************** PP
GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
+++ +a +++ F++rf eal yysalfd+l +++ +r+s++r+ +E+ ++gr++ nv+acega+r+er et+++W+ r ++aG++++
Pavir.3KG495500.1.p 265 FIHGTVNAF-SAPFFATRFREALFYYSALFDALdATTTGRDSRQRALIEQNIFGRAALNVIACEGADRVERPETYRQWQVRNRRAGLRQL 353
*99988765.599********************888999*************************************************** PP
GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
pl+ ++++ ++ ++ ++ + + v+ ++++l++gWk+r L+++S W
Pavir.3KG495500.1.p 354 PLNPEIVQVVREKVKGCYHKDFVVDTDHHWLLQGWKGRILYAISTW 399
******************889************************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MQPRREGGGG PAHAAPPLRP GGRRRRPPRR HRAPQPDQAP RQPARRRHAA PRPLLRRGPA 60
RAARRLAGTA YHHPPPLMPA AIPPVADVLQ AYQLYMSAIC FKKAFYLFSN QTIYRASLGK 120
KRIHIVDYGI HYGLQWPCFL RRIACRPDGA GPPPEVRITG IDLPQRGFHP AQRVEETGRR 180
LSKYAQEFGV PFSYQVIAAS RMETIRAEDL NLNLNLNPYG DDDDEVLIVN CIFQLENLMD 240
ESVSMESSPR DVALGNIRRM RPHAFIHGTV NAFSAPFFAT RFREALFYYS ALFDALDATT 300
TGRDSRQRAL IEQNIFGRAA LNVIACEGAD RVERPETYRQ WQVRNRRAGL RQLPLNPEIV 360
QVVREKVKGC YHKDFVVDTD HHWLLQGWKG RILYAISTWV ANEDDAGSCF *
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
