PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G29065.1
Common NameSCL34, T9I4.14
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 630aa    MW: 72529.2 Da    PI: 5.2397
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G29065.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.82.1e-1072506272373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn.sseelaalklfsevsPilkfshlt 97 
                  ++lL++cA+a+s+gd++ a ++L ++++++sp gd+ qRla++f++AL+arl++s+  + ++  ++ ++s k+  ++++ a++++   sP++++ ++ 
  AT2G29065.1 250 RTLLTHCAQAISTGDKTTALEFLLQIRQQSSPLGDAGQRLAHCFANALEARLQGSTGPMIQTYyNALTSSLKDtAADTIRAYRVYLSSSPFVTLMYFF 347
                  689***************************************************7766666663444444444599********************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                     +Il+ ++ +  +Hi+Df+i +G+QWp ++q++++R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe+++++++++e++++e+
  AT2G29065.1 348 SIWMILDVAKDAPVLHIVDFGILYGFQWPMFIQSISDRKDVPRKLRITGIELPQCGfrPAERIEETGRRLAEYCKRFNVPFEYKAIASQNWETIRIED 445
                  ******************************************************9999****************************999********* PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  L+++p+E+laVn  l+l++l de++s e+ +rd+vLkl+++++P+v++++  + + n++ F  rf ea+++ysalfd+++++lpr+++eri  Ere+ 
  AT2G29065.1 446 LDIRPNEVLAVNAGLRLKNLQDETGSEENcPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFY 543
                  *****************************99******************************************************************* PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  gre++nv+ace+a+r+er et+++W+ r+ +aGFk+ +++ + ++  +  l+k    + + v+e+s++l++gWk+r+L++ S+W
  AT2G29065.1 544 GREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKPELVELFRGKLKKWRyHKDFVVDENSKWLLQGWKGRTLYASSCW 627
                  *************************************************9999998899************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.841223607IPR005202Transcription factor GRAS
PfamPF035147.4E-105250627IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MDPNFSESLN GFEYFDGNPN LLTDPMEDQY PPPSDTLLKY VSEILMEESN GDYKQSMFYD  60
SLALRKTEEM LQQVITDSQN QSFSPADSLI TNSWDASGSI DESAYSADPQ PVNEIMVKSM  120
FSDAESALQF KKGVEEASKF LPNSDQWVIN LDIERSERRD SVKEEMGLDQ LRVKKNHERD  180
FEEVRSSKQF ASNVEDSKVT DMFDKVLLLD GECDPQTLLD SEIQAIRSSK NIGEKGKKKK  240
KKKSQVVDFR TLLTHCAQAI STGDKTTALE FLLQIRQQSS PLGDAGQRLA HCFANALEAR  300
LQGSTGPMIQ TYYNALTSSL KDTAADTIRA YRVYLSSSPF VTLMYFFSIW MILDVAKDAP  360
VLHIVDFGIL YGFQWPMFIQ SISDRKDVPR KLRITGIELP QCGFRPAERI EETGRRLAEY  420
CKRFNVPFEY KAIASQNWET IRIEDLDIRP NEVLAVNAGL RLKNLQDETG SEENCPRDAV  480
LKLIRNMNPD VFIHAIVNGS FNAPFFISRF KEAVYHYSAL FDMFDSTLPR DNKERIRFER  540
EFYGREAMNV IACEEADRVE RPETYRQWQV RMVRAGFKQK TIKPELVELF RGKLKKWRYH  600
KDFVVDENSK WLLQGWKGRT LYASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-412536278374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236242KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.385290.0inflorescence
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible266775_at0.0
Expression AtlasAT2G29065-
AtGenExpressAT2G29065-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G29065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G29065
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053150.0AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001189628.10.0GRAS family transcription factor
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A178VXP40.0A0A178VXP4_ARATH; Uncharacterized protein
STRINGAT2G29065.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Representative plantOGRP26615129
Publications ? help Back to Top
  1. Menges M,Hennig L,Gruissem W,Murray JA
    Cell cycle-regulated gene expression in Arabidopsis.
    J. Biol. Chem., 2002. 277(44): p. 41987-2002
    [PMID:12169696]
  2. Bolle C
    The role of GRAS proteins in plant signal transduction and development.
    Planta, 2004. 218(5): p. 683-92
    [PMID:14760535]
  3. Tian C,Wan P,Sun S,Li J,Chen M
    Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
    Plant Mol. Biol., 2004. 54(4): p. 519-32
    [PMID:15316287]
  4. Gao MJ,Parkin I,Lydiate D,Hannoufa A
    An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase.
    Plant Mol. Biol., 2004. 55(3): p. 417-31
    [PMID:15604690]
  5. Lee MH, et al.
    Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.
    Plant Mol. Biol., 2008. 67(6): p. 659-70
    [PMID:18500650]
  6. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  7. Borges F, et al.
    Comparative transcriptomics of Arabidopsis sperm cells.
    Plant Physiol., 2008. 148(2): p. 1168-81
    [PMID:18667720]