PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG137500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 508aa    MW: 52263.9 Da    PI: 6.2015
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG137500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.7e-30265323259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+
  Pavir.3KG137500.1.p 265 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKAVLITTYEGTHNHQ 323
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-33250325IPR003657WRKY domain
SuperFamilySSF1182909.94E-28257325IPR003657WRKY domain
PROSITE profilePS5081129.321259325IPR003657WRKY domain
SMARTSM007741.7E-36264324IPR003657WRKY domain
PfamPF031061.4E-26266323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDLVPKQEQH KEEEEEKEEE KEGMMILAEH GSRANFCGGG RRSEIKEVDF FSTGGARRRN  60
DGDGDGEDGN REAGALGRGN TTVNTALDLL TTAATAATPV NGGEGTAAGA ASDHKEAATV  120
EGELRQAGEE NRRLRRMLDD LTRSYSALYH QLIQAQQQQQ ASGAANSMLP AAAATVPAGL  180
QFVDPRMAPA VRAPAALDGG DRGDSDGGSG SAGEADRQNS GRSARQEEGS GTPEHDEVSA  240
ERAAEAPLRR VRVSVRARSE APMISDGCQW RKYGQKMAKG NPCPRAYYRC TMATGCPVRK  300
QVQRCAEDKA VLITTYEGTH NHQLPPAAAA MAKTTSSAAA MLLSGPAASR DAGALFAGHH  360
VAAPLFQSSY PYASAAMGAT LSASAPFPTI TLDLTHPPAP ASAAAGLLPH RPPALPALPF  420
PMYGGFPAAH RPAVPPQPAT VSVGLMDGRN RSALETMTAA ITSDPNFTAA LAAALSTIIG  480
GGAEAAPRSG AGASDGDGNN SGSGGGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22252327276WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG137500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809809.10.0WRKY transcription factor 6-like isoform X2
TrEMBLA0A3L6SZ680.0A0A3L6SZ68_PANMI; Putative WRKY transcription factor 47
STRINGPavir.Ca01248.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-53WRKY family protein