PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.2NG193100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 27744.1 Da PI: 4.3204 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4e-15 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr ++ +grW+AeIrdp++ ++r s+g+++++e Aa+a+ a++++++ Pavir.2NG193100.2.p 43 RFCGVRKRP-WGRWAAEIRDPVK---KTRKSIGSYDSEEAAAAAYQAYANQIRE 92 566******.**********654...5**********99999999999999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-13 | 42 | 93 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.23E-13 | 42 | 77 | No hit | No description |
Pfam | PF00847 | 2.6E-9 | 43 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-16 | 43 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-10 | 43 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.16 | 43 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MMPCMKKVRI FCSDPDATDS SGDEEGQNTK DLEVSKKKEK SSRFCGVRKR PWGRWAAEIR 60 DPVKKTRKSI GSYDSEEAAA AAYQAYANQI REELLAIKAQ QFVSEHADMS SSSSVSCVSS 120 SGCEQTVQVQ KGVFMEIDPE PLDEVLLNFS TPKEISMDVL LGRIDEISVS DSISLANELP 180 HDDFTRIEDA FPISDFIGAT HKPLDEDYIG LANISHLPLP MKDPAFNLDA ELDWSGFDFD 240 TIEHELQVL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.2NG193100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956545.1 | 1e-130 | ethylene-responsive transcription factor ERF021 | ||||
Refseq | XP_004956547.1 | 1e-130 | ethylene-responsive transcription factor ERF021 | ||||
Refseq | XP_022679717.1 | 1e-130 | ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | K3ZVW0 | 1e-128 | K3ZVW0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ba02999.1.p | 1e-160 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72360.1 | 2e-13 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.2NG193100.2.p |