PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG027900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 622aa MW: 65318.6 Da PI: 7.4375 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.4e-16 | 271 | 330 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Pavir.2NG027900.2.p 271 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 330 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 47.5 | 4.3e-15 | 375 | 424 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g Pavir.2NG027900.2.p 375 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 424 9***************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-16 | 271 | 340 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.00E-19 | 271 | 338 | No hit | No description |
Pfam | PF00847 | 8.3E-13 | 271 | 330 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-29 | 272 | 344 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-16 | 272 | 339 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 272 | 338 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 273 | 284 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.41E-22 | 373 | 434 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-17 | 373 | 433 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-33 | 374 | 438 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 374 | 432 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.19 | 374 | 432 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-10 | 375 | 424 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 414 | 434 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MTNNSSNSND NGTNAAASGW LGFSLSPHMA SAMDDRHHHH VQQQQHQQHG LFFPSVTAAA 60 AAAAAYGLGA GDAVATSASP YYTPQLASMP LKSDGSLCIM EALRRSDQDH HGPKLEDFLG 120 AAQSQAMALS LDNAAAASSL YYYGDAGGGG HHLGSSFLQP CADLYGGPSA ASLVGDDEAA 180 AAATAMASWV AARAESGVLS AAGQHQHHHA LALSMSSGSL MSSCVAAHPG EYGMVAGAAM 240 DGGRKRGGAA GGQKQPVHHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT 300 RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE TYQEELEEMK NMTRQEYVAH 360 LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVSGNKDL YLGTFSTQEE AAEAYDIAAI 420 KFRGLNAVTN FDITRYDVDK IMASNTLLPG DLARRKKDGE APVADDVGGV VTAAAAALVQ 480 AGNGSAADTW KVAAALAAAP RAAEHAHAHH DVLSGAEAFS VLHDLVTAAD GGAGAAQHMP 540 MSSASSLVTS LGNSREASPD RGGGLSMLFS KPPPAQHQAA INNKPMSPLM PLGSWASPVS 600 ARAAASVSIA HMPVFAAWTD A* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG027900.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088263 | 0.0 | BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803955.1 | 0.0 | AP2-like ethylene-responsive transcription factor CRL5 | ||||
Swissprot | Q84Z02 | 0.0 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A3L6QR48 | 0.0 | A0A3L6QR48_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ba03911.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-125 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG027900.2.p |
Publications ? help Back to Top | |||
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