|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.2KG541700.2.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 657aa MW: 72341.4 Da PI: 4.6124 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2KG541700.2.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 31 | 75 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+W++eEd l ++q+G+++W+ Ia+ + +t+ qc+ rw++yl
Pavir.2KG541700.2.p 31 SWSAEEDNVLRAQIAQHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 75
6****************************9.**************7 PP
|
2 | Myb_DNA-binding | 41.8 | 2.6e-13 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g W+ eEd ll +a k+lG++ W+ Ia+ + gRt++ +k+r+ +
Pavir.2KG541700.2.p 81 KGGWSREEDMLLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 124
688*******************.*********.**********976 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 657 aa
Download sequence Send
to blast |
MATGPDLSSS SGAAAAAVPD AAAKKDRHIV SWSAEEDNVL RAQIAQHGTD NWTIIAAQFK 60 DKTARQCRRR WYNYLNSECK KGGWSREEDM LLCEAQKLLG NRWTEIAKVV SGRTDNAVKN 120 RFSTLCKRRA KDDEPFQENG TPCSNTNAKR VLTKTGCVTP GTAGSSLPMK QKSSDLKENI 180 VPNMRLFGQE KGTQQDARQP LATISSNNQQ NPNTVKSQNL IAPTIKTLLG PEQHCVKQEG 240 NFMKKDDPKV AILLQQADLL CSLATKINHE DTSQSMDEAW QQLQHHLVKT EDNGMSENSG 300 SGIASLLEEL DDLIVDPYES KEEDEEKSRE QNERQTDVGN EQCSGPSQAS MEVTSNMAPD 360 EMIEDHTVGS CKEVSSLCRK MLSGSMEACP GAKITASENL SEVAEDRRLQ QVESTSPVLT 420 DFDDFIIDPY ENKEEDEQNL RELNGQIDVH NHQSYCPTQA TMEVTTEIAP DELMEACPVD 480 NCKEDNNLCR NVLSGSMEPS PGAEKAAYPN LSEVAEERKL QCMQSISTVP TNCQTKECGE 540 TSVPENLNEV AEDSRHQCVE FTSPAHTFLR AKAGAEAYAS PRIDVVAKDS KLSSMEFTSP 600 AHTVATFQPY ADDMPTPKFT ASERNFLLSV LELTSPGSRP ETSQQPSCKR ALLNSL*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK063426 | 1e-124 | AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence. |