PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG045600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 415aa    MW: 45904.3 Da    PI: 5.2406
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG045600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21e-131258349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +en+s r+vtf kRr g+ K A  LS+L++a++a+ + s+ gk+  +
  Pavir.2KG045600.2.p 12 VENDSDRSVTFFKRRSGLYKAAADLSTLTGARIAIALESEIGKMSSF 58
                         79*****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-12161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.269262IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-9424IPR002100Transcription factor, MADS-box
CDDcd002665.22E-16470No hitNo description
SuperFamilySSF554559.94E-16572IPR002100Transcription factor, MADS-box
PfamPF003194.2E-151258IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-92439IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-93960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MTRPRRTGIS YVENDSDRSV TFFKRRSGLY KAAADLSTLT GARIAIALES EIGKMSSFGT  60
PSAGPIIDSF LSGNILVDPS ANEEQKVEIT HMQNEVFVVE REKYMEDRRK QETSARAKEI  120
QETSRKAKLV YGKVEDLSVQ ELNEMVCDLS QIKQEINDGC RPQQPSYQLE VGQLSSSSSL  180
SQIQMPPRRL PWTPRQPSFH LPRSSWSRPQ PSSLMPQHPL VVEPQVQMML SPIETYQNNY  240
NTQPGIHING NIPQPFSQSF LVSALPPPPP PPPSSSAQIT FCNEFPPPSS SHELPTPLPK  300
QTELHPTKQY ENHASAQDIT IDHSFVNYQW PSPIPFNEPY YDISLYGMNL NLGGHGDYGG  360
QAASEHDMPG PSGLHQHGYD CPYMNILGSF SSGECPADYS AGNNLGDMGP LGDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG045600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800255.10.0uncharacterized protein LOC112880020
TrEMBLA0A2T7EKI60.0A0A2T7EKI6_9POAL; Uncharacterized protein
STRINGPavir.Bb00235.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-15AGAMOUS-like 61