PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1NG550900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 345aa MW: 35829.7 Da PI: 8.4922 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 149 | 171 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Pavir.1NG550900.1.p 149 YECKTCNKCFPTFQALGGHRASH 171 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00083 | 245 | 267 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Pavir.1NG550900.1.p 245 HECSICGAEFASGQALGGHMRRH 267 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.0E-11 | 148 | 173 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.05E-9 | 148 | 171 | No hit | No description |
SMART | SM00355 | 0.094 | 149 | 171 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 149 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 151 | 171 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.05E-9 | 240 | 267 | No hit | No description |
Pfam | PF13912 | 1.5E-12 | 244 | 268 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 245 | 267 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.64 | 245 | 272 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 247 | 267 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MHTPEAVEIA KPPPLVVMPT SSTEHSAGEL DRHQQPPLSA AVKRKRTKRP RHHPPASSAS 60 SSESTTTEEE DMAHCLILLA QGAAGGSGSG VAVDSKPSPS PPAAQQQAPQ PSPPAAAPPP 120 LVKSERYTSR KYTEAATTVD GVKAGFYVYE CKTCNKCFPT FQALGGHRAS HKKPRLAGAD 180 DEIAINVVTA SKTAIKQQQR PPMATASPPP ALQPPQMDVA VFPDVTTALS LNSVAAIRSS 240 KLRVHECSIC GAEFASGQAL GGHMRRHRPL NAPERAVTAI AGTDTKKEGS ASINLELDLN 300 LPAPSDGEAV VSLPAAVVLG LGPLSDGKKA GLMLTASALV DCHY* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1NG550900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003989 | 4e-67 | AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06. | |||
GenBank | AP004026 | 4e-67 | AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04. | |||
GenBank | AP014958 | 4e-67 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 4e-67 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822199.1 | 1e-176 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2S3GUR4 | 1e-175 | A0A2S3GUR4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RPR9 | 1e-174 | A0A3L6RPR9_PANMI; Zinc finger protein ZAT5 | ||||
STRING | Pavir.Aa00068.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04390.1 | 5e-44 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1NG550900.1.p |