PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG515000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 383aa MW: 40330.2 Da PI: 7.5394 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl Pavir.1NG515000.1.p 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eE+ ++ + G++ W+ Ia+ ++ gRt++++k++w++ Pavir.1NG515000.1.p 69 GDFTEEEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.714 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.01E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.924 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTEEEEHIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK 120 RAPSRRARAN QADPYLAATD GNMCGTSGGV NTGSSATAAT PQALSASALE RIQLHMRLQG 180 LYGAFGCATD NAAAAAAAAA APQWPKLETL LQTNKPLQGS LPTDAVATTV SVQQPQRLVD 240 RSGLAASAGE AAGETEHQLN SSSAAGATYM APPGSFERPK LGFHSPSSEA ETASADMAPC 300 PMVGVYGGGG GFGPHHDELY DFLYSKYGSL GGGVAQGGHT HIPPLPELQY PDGADEKFST 360 WAASCDYGAA AGGHQLQGEP HQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG515000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792029.1 | 0.0 | transcription factor CSA-like | ||||
Swissprot | Q9FKL2 | 1e-89 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A2S3GTX1 | 0.0 | A0A2S3GTX1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00264.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-90 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG515000.1.p |
Publications ? help Back to Top | |||
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