PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG407200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 462aa    MW: 48907.7 Da    PI: 9.0498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG407200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19223273256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Pavir.1KG407200.1.p 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 273
                          59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-31222282No hitNo description
Gene3DG3DSA:3.30.730.103.0E-32223281IPR001471AP2/ERF domain
SMARTSM003801.1E-38223286IPR001471AP2/ERF domain
PROSITE profilePS5103223.024223280IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23223281IPR016177DNA-binding domain
PfamPF008472.7E-12224273IPR001471AP2/ERF domain
PRINTSPR003678.3E-11224235IPR001471AP2/ERF domain
PRINTSPR003678.3E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEPADRGGGG RGLGRGRGWK GKAVTSGGPA AAAAGRQLAP VLEDAPAAAL LRPLKKIRSP  60
DRRLHRSLST LSSPAPASSD SSSLSHPVSP PATPLPSTRH VFPFAYELAP AAAAAAPRLM  120
PLLQYSSVHQ QPPPPPQQQQ PLQHQQMISF GGSQQHQHQQ PPPFGAAASP LFPPQLVAPE  180
AQQQMLLRYW SEALNLSPRG FRGGAVPPAL YQQLLRSAGP PKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDTAEDAA MAYDREAFKL RGENAKLNFP DLFLGKGRVG GSGRTSASAA  300
ASCSSSSSSA PPTPDETNTN QAQKHQTSNC EAKPLLPETE QANNSEPEPN PQLQPAADHQ  360
GGDANAAMLQ PPATSGGVWG PAEEAWFSAW GPGSSVWDYD MDNAHGLFLQ SCFAGEATSM  420
DYESSATDAP ATPAVGTAMA HASAASISPP PPRSPAYMWK D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19222280463ATERF1
3gcc_A1e-19222280463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1515RGGGGRGLGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79518e-42callus| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG407200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276740.0KJ727674.1 Zea mays clone pUT5601 AP2-EREBP transcription factor (EREB76) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809849.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2S3GRD60.0A0A2S3GRD6_9POAL; Uncharacterized protein
STRINGPavir.Ab02396.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.17e-36ERF family protein