PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG360700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 30807.6 Da PI: 7.3183 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.3e-18 | 42 | 92 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp + r +lg+++tae+Aa a++aa+++++g+ Pavir.1KG360700.1.p 42 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTYDTAEQAACAYDAAARAMRGN 92 69*******.**********84....35999**********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.5E-33 | 42 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 42 | 99 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.69E-18 | 42 | 99 | No hit | No description |
Pfam | PF00847 | 3.7E-11 | 42 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-30 | 42 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.893 | 42 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEDAAAHVHH YAHAPHHLHR SKRPPAAIMD EDADGDAVPK GRYRGVRRRP WGRFAAEIRD 60 PMSKERRWLG TYDTAEQAAC AYDAAARAMR GNKARTNFPG HVAAGYWPWG APPPAAPTRN 120 PFLLHNLIMS SSPHHGLRLL HHAGHGHVVS PAPPSRLPAP DAAAAMPAPS PVAPPPGALD 180 DEDVDDWGDL MRGEPADAGL LQDALHGFYP AGTRPRAGAS RNFAVGAAGG IAAVPIKQER 240 QEFIDVDEEG EYPMMPQGRL GDVIEYPSFV EVVAAPSAPT RRGRRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-20 | 29 | 99 | 1 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG360700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954877 | 1e-109 | EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801749.1 | 1e-129 | ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A3L6RUV0 | 1e-145 | A0A3L6RUV0_PANMI; Ethylene-responsive transcription factor ESR2-like | ||||
STRING | Pavir.Ab02178.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7263 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 5e-11 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG360700.1.p |