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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1KG093500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 302aa MW: 31851.8 Da PI: 9.4644 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1KG093500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 59.7 | 6.3e-19 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw +
Pavir.1KG093500.1.p 11 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56
79******************************.***********985 PP
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2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 63 | 106 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r ++T+eEd ++ a+++lG++ W++Iar ++ gRt++ +k++w++
Pavir.1KG093500.1.p 63 RRPFTPEEDTAILAAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 106
679*******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MGVESECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTPEE DTAILAAHAR LGNRWAAIAR LLPGRTDNAV KNHWNSSLKR KLATAAAPEA 120 ADSERPCKRA SPGPGSPTGS ERSELGHGSG VGGAQVFRPV PRAGGFDAIG AADARPPPPR 180 DEDPITSLSL SLPGLDQASS GFRHDSARSH FQELSPSRSP SPPSPPSSSS SSTTGPYPFS 240 GELVAAMQEM IRAEVRKYMS GAGLRAGCVA GALGEACMPQ LVEGVMRAAA ERVGAVVTSR 300 P*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT038391 | 0.0 | BT038391.1 Zea mays full-length cDNA clone ZM_BFb0229K03 mRNA, complete cds. |
GenBank | EU956045 | 0.0 | EU956045.1 Zea mays clone 1556153 MYB transcription factor TaMYB1 mRNA, complete cds. |