PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG089300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 1147aa    MW: 126893 Da    PI: 9.0961
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG089300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-074677336
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                          W++eE e+++ a +++G++ W++Ia  +   Rt
  Pavir.1KG089300.1.p 46 QWSKEELERFYGAYRKYGKD-WRKIAGAIR-DRT 77
                         6*****************99.*****9999.888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-94192IPR009057Homeodomain-like
PfamPF002491.4E-54678IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-54678IPR009057Homeodomain-like
CDDcd001672.26E-44778No hitNo description
PfamPF065843.4E-32620720IPR033471DIRP domain
SMARTSM011356.5E-55620721IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1147 aa     Download sequence    Send to blast
MASARNVRNA NKRYAKINDD WKSEDTASVP KSKVRKKKLS DMLGSQWSKE ELERFYGAYR  60
KYGKDWRKIA GAIRDRTSDI VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DHESNDSPKT SRKPQKRGRA KFQSVSKTSD TCYPDQLQSQ PASSSYGCLS LLKKKRSRDL  180
FVGNRPRAVG KRTPRVPVAS MYHRDERGAP NRQAKPDSNN GDDEGAHVAP LALAEVYQRG  240
GSPQVSQTPG RSGDHIICSC LPLKNADSEM GSSKLHGFQL DADYPEASLG SREAETGYYT  300
KGASYLMSNK RSSSGKPQKK VKRSQKRRKK EAHKTGDQYE YDREACSGTE EGHSGRKVKE  360
EPELETLGRK TAWPSSTSNK RSCQLFFDDE SSALDALHTL ADLSVNILQP SSVIESESSA  420
QIKDENKDND SDGKPSMPAT VSVYEQKDNS KSIVKKLKRQ SEIASTDMVT RKKGKLSKDP  480
HHDGSTTSEV KKQGCTCGIK TEKKKRKSSM GKVSKDEKNI LKDVEKTEVS AEEGKTSSNK  540
DTTTQGAMTP QADLTSKVKS RRKLGIQKSL SQECKPTEGA GDSGSEKLSY SMSNIIGVKD  600
KLSHCLSSRL LRKWCMFEWF YSAIDYLWFA KSEFVEYLNH VKLGHVPRLT RVEWGVIRSS  660
LGKPRRLSKQ FLREEREKLS QYRDSVRQHY AELRSGAREG LPTDLARPLA VGQRVIACHP  720
RTRELHDGNV LTVDHNCCRV QFDRPELGVE FVMDIDCMPL HPLENFPDRL SEANEDQMKE  780
LGTGGLARFT SNLNSADATF HIPSGHPIST LMKQAKGDSI DSIAQAKATV NEVTAATQQA  840
MYNQPSTLSQ IQEREADIRA LAELSRALDK KASATRLEAL LVELRHMNEE VSGMQKDGEI  900
IRDLEHFRKQ YAMVLVQLRD SNDQVAAALL SLRQRNTYHG NPVQSYPKSM ENGMAFAGAP  960
DPYNLFGYIN PESGSQVIEV IETSKCRAKT MVNVAIQAMC KVSEGENAFA KIGEALDNLN  1020
SRGTGFGSSI LGIRRIPPDS GQSNASYQDN GTPAPATNSS SRLPNGCDSD GQFPTELISS  1080
CVAMMLMIKN CTEKQYHPAE VAHILDSALS GLQPCSSQNI PIFTEIEMCM GIIKNQMLAL  1140
IPTPSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320326VKRSQKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.93390.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG089300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820688.10.0protein ALWAYS EARLY 2-like
TrEMBLA0A2T8IHJ00.0A0A2T8IHJ0_9POAL; Uncharacterized protein
STRINGSi025839m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding