PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00096.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 299aa    MW: 31721.4 Da    PI: 4.5435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00096.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1884134155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr ++ +g+++AeIrdp++     r++lg+f+tae+Aa+ ++  +++l+g
  Pahal.J00096.1  84 PRYRGVRKRP-WGKYAAEIRDPYK---GERIWLGTFDTAEDAARKYDSEARRLRG 134
                     68********.**********865...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.11E-2884144No hitNo description
PfamPF008472.0E-1084134IPR001471AP2/ERF domain
PROSITE profilePS5103222.885142IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2185142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-3085143IPR001471AP2/ERF domain
SMARTSM003808.4E-3485148IPR001471AP2/ERF domain
PRINTSPR003672.1E-108697IPR001471AP2/ERF domain
PRINTSPR003672.1E-10108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKQERVAEPT TIRKLVRVFW DDRDATDSSG DEAGAGAVRK FVREIRVVEH RAPCKVITPA  60
PAPAGRVAAG GGKRKAPGVP AAEPRYRGVR KRPWGKYAAE IRDPYKGERI WLGTFDTAED  120
AARKYDSEAR RLRGPSATTN FPEAPPTPVL ARPSPHAIPA ARFGAADISS AEESSDESQL  180
VGSPVSVLLR AMPGETDDAA GPPALKPTTD AADPTAEDET SPISADALLP QLDEEAFPFA  240
GIITAPFGDP TLGVMFEDLA APRLDHLADD DLGDLPLWPG ADGCRFSDIG DGDFFAAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2278143773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276776e-66KJ727677.1 Zea mays clone pUT5604 AP2-EREBP transcription factor (EREB135) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813270.10.0ethylene-responsive transcription factor ERF037-like
TrEMBLA0A2S3HLM70.0A0A2S3HLM7_9POAL; Uncharacterized protein
STRINGPavir.Db02131.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.15e-27ethylene response factor 7