PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03480.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 558aa    MW: 59664.7 Da    PI: 6.8342
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.44.6e-263144483128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkd 89 
                     +G+rF+Ptde+l+ ++L+ k +g+++++  ++k++d+y++ P+  ++   +  ++  wy Fs+rd+ky++g r++r+       + gyWk+  k 
  Pahal.I03480.1 314 AGVRFRPTDEDLI-FFLRLKHAGREIPV-GFFKDFDVYQASPEACKAacGFVDDDGCWYAFSPRDRKYKNGARPKRSvvdesdRQLGYWKSNTKL 406
                     7************.9*************.99**************9533333456699******************6466655559*****9999 PP

             NAM  90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+++   +g+++g  ++L+f+ g++p+g++t W m+ey++
  Pahal.I03480.1 407 AYVVTSdkdEGAAIGNVTSLTFHVGQQPRGTQTPWKMKEYAI 448
                     9999886777777***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-33311473IPR003441NAC domain
PROSITE profilePS5100533.388312473IPR003441NAC domain
PfamPF023651.5E-13314447IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MVIISPVDEL ASSHPPAADA AGRASQPPAS NPEPLFYYLI RGTAAYPAAA GTAAWSPHPP  60
YASTPTTSGG FNPSSSPLLA GYMMDPFSAQ PPPARIVPQA MAEPSYHHHL PTMLGFPPSF  120
APAPFAQGAM PPPVLVPMQT TSVEPAYYYP QAQGAAASAG EEAATAHEVP DTQKAQEATT  180
PTPRRRGRPR KTAATAAAAS KPVFKAPKRA TARSNRAALQ LTTSVTNDLL ATMAGQVQVQ  240
KPEQAASVAA ASTSDATQTA PCRNPTPLLC QEHWRPQSTC SNSLSAGDQA AAVVVGQQQE  300
VMLLPYAYAE TSAAGVRFRP TDEDLIFFLR LKHAGREIPV GFFKDFDVYQ ASPEACKAAC  360
GFVDDDGCWY AFSPRDRKYK NGARPKRSVV DESDRQLGYW KSNTKLAYVV TSDKDEGAAI  420
GNVTSLTFHV GQQPRGTQTP WKMKEYAIPE NQHAPDGSVM RLNDWVACKL FYKERVIAAG  480
KKKRVIAAGK KEDQSGEDGK NVGEAAGGDE GTQMVPTDQT LGDFDHDLCV EDYPGYDDAF  540
AEQNHAANGN ILHRRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-2231547420166NO APICAL MERISTEM PROTEIN
1ut4_B2e-2231547420166NO APICAL MERISTEM PROTEIN
1ut7_A2e-2231547420166NO APICAL MERISTEM PROTEIN
1ut7_B2e-2231547420166NO APICAL MERISTEM PROTEIN
3swm_A3e-2231547423169NAC domain-containing protein 19
3swm_B3e-2231547423169NAC domain-containing protein 19
3swm_C3e-2231547423169NAC domain-containing protein 19
3swm_D3e-2231547423169NAC domain-containing protein 19
3swp_A3e-2231547423169NAC domain-containing protein 19
3swp_B3e-2231547423169NAC domain-containing protein 19
3swp_C3e-2231547423169NAC domain-containing protein 19
3swp_D3e-2231547423169NAC domain-containing protein 19
4dul_A2e-2231547420166NAC domain-containing protein 19
4dul_B2e-2231547420166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190RRGRPRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6S3Y60.0A0A3L6S3Y6_PANMI; Uncharacterized protein
STRINGPavir.J01596.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.16e-26NAC domain containing protein 2